Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2174

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2172 and Shewana3_2173 overlap by 8 nucleotidesShewana3_2173 and Shewana3_2174 are separated by 66 nucleotidesShewana3_2174 and Shewana3_2175 are separated by 113 nucleotides Shewana3_2172: Shewana3_2172 - electron transport complex protein RnfG (RefSeq), at 2,605,396 to 2,606,022 _2172 Shewana3_2173: Shewana3_2173 - electron transport complex RsxE subunit (RefSeq), at 2,606,015 to 2,606,713 _2173 Shewana3_2174: Shewana3_2174 - DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq), at 2,606,780 to 2,607,415 _2174 Shewana3_2175: Shewana3_2175 - phage integrase family protein (RefSeq), at 2,607,529 to 2,608,851 _2175 Position (kb) 2606 2607 2608Strain fitness (log2 ratio) -1 0 1 2 3at 2606.641 kb on + strand, within Shewana3_2173at 2606.950 kb on + strand, within Shewana3_2174at 2606.952 kb on + strand, within Shewana3_2174at 2607.097 kb on + strand, within Shewana3_2174at 2607.486 kb on - strandat 2607.621 kb on + strandat 2607.982 kb on - strand, within Shewana3_2175at 2608.280 kb on + strand, within Shewana3_2175

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,606,641 + Shewana3_2173 0.90 +1.2
2,606,950 + Shewana3_2174 0.27 +0.2
2,606,952 + Shewana3_2174 0.27 +2.8
2,607,097 + Shewana3_2174 0.50 -0.9
2,607,486 - +1.8
2,607,621 + +0.8
2,607,982 - Shewana3_2175 0.34 +2.8
2,608,280 + Shewana3_2175 0.57 +2.8

Or see this region's nucleotide sequence