Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2152 and Shewana3_2153 are separated by 185 nucleotides Shewana3_2153 and Shewana3_2154 are separated by 140 nucleotides
Shewana3_2152: Shewana3_2152 - DNA-binding transcriptional regulator HexR (RefSeq), at 2,578,283 to 2,579,137
_2152
Shewana3_2153: Shewana3_2153 - pyruvate kinase (RefSeq), at 2,579,323 to 2,580,762
_2153
Shewana3_2154: Shewana3_2154 - acyl-CoA dehydrogenase (RefSeq), at 2,580,903 to 2,583,182
_2154
Position (kb)
2579
2580
2581 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2578.341 kb on + strand at 2578.382 kb on - strand, within Shewana3_2152 at 2578.566 kb on - strand at 2578.617 kb on + strand, within Shewana3_2152 at 2578.625 kb on - strand, within Shewana3_2152 at 2578.945 kb on + strand, within Shewana3_2152 at 2579.039 kb on + strand, within Shewana3_2152 at 2579.180 kb on - strand at 2579.611 kb on + strand, within Shewana3_2153 at 2579.767 kb on - strand, within Shewana3_2153 at 2580.109 kb on + strand, within Shewana3_2153 at 2580.223 kb on + strand, within Shewana3_2153 at 2580.407 kb on + strand, within Shewana3_2153 at 2580.735 kb on + strand at 2580.950 kb on - strand at 2580.998 kb on + strand at 2581.374 kb on - strand, within Shewana3_2154
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,578,341 + +0.4 2,578,382 - Shewana3_2152 0.12 +1.2 2,578,566 - +1.8 2,578,617 + Shewana3_2152 0.39 -0.4 2,578,625 - Shewana3_2152 0.40 +2.8 2,578,945 + Shewana3_2152 0.77 +1.2 2,579,039 + Shewana3_2152 0.88 -0.0 2,579,180 - +1.8 2,579,611 + Shewana3_2153 0.20 +2.1 2,579,767 - Shewana3_2153 0.31 +1.8 2,580,109 + Shewana3_2153 0.55 +1.6 2,580,223 + Shewana3_2153 0.62 +2.4 2,580,407 + Shewana3_2153 0.75 +1.4 2,580,735 + +0.8 2,580,950 - +1.1 2,580,998 + +0.4 2,581,374 - Shewana3_2154 0.21 +0.2
Or see this region's nucleotide sequence