Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2047

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntinfC and rpmI are separated by 85 nucleotidesrpmI and rplT are separated by 16 nucleotidesrplT and Shewana3_2047 are separated by 193 nucleotidesShewana3_2047 and Shewana3_2048 are separated by 250 nucleotides Shewana3_2044: infC - translation initiation factor IF-3 (RefSeq), at 2,453,312 to 2,453,743 infC Shewana3_2045: rpmI - 50S ribosomal protein L35 (RefSeq), at 2,453,829 to 2,454,023 rpmI Shewana3_2046: rplT - 50S ribosomal protein L20 (RefSeq), at 2,454,040 to 2,454,396 rplT Shewana3_2047: Shewana3_2047 - thioredoxin reductase (RefSeq), at 2,454,590 to 2,455,543 _2047 Shewana3_2048: Shewana3_2048 - L-alanine dehydrogenase (RefSeq), at 2,455,794 to 2,456,909 _2048 Position (kb) 2454 2455 2456Strain fitness (log2 ratio) -1 0 1 2 3at 2454.614 kb on - strandat 2455.093 kb on - strand, within Shewana3_2047at 2455.175 kb on + strandat 2455.175 kb on + strand, within Shewana3_2047at 2455.183 kb on - strand, within Shewana3_2047at 2455.183 kb on - strand, within Shewana3_2047at 2455.219 kb on + strand, within Shewana3_2047at 2455.457 kb on - strandat 2455.492 kb on - strandat 2455.584 kb on + strandat 2455.673 kb on - strandat 2456.135 kb on - strand, within Shewana3_2048at 2456.364 kb on + strand, within Shewana3_2048

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,454,614 - +1.4
2,455,093 - Shewana3_2047 0.53 +1.6
2,455,175 + +2.8
2,455,175 + Shewana3_2047 0.61 +1.8
2,455,183 - Shewana3_2047 0.62 +1.8
2,455,183 - Shewana3_2047 0.62 +2.0
2,455,219 + Shewana3_2047 0.66 +0.4
2,455,457 - +2.0
2,455,492 - +3.2
2,455,584 + +1.6
2,455,673 - +1.8
2,456,135 - Shewana3_2048 0.31 +1.5
2,456,364 + Shewana3_2048 0.51 +1.8

Or see this region's nucleotide sequence