Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1934 and Shewana3_1935 are separated by 369 nucleotides Shewana3_1935 and Shewana3_1936 are separated by 432 nucleotides
Shewana3_1934: Shewana3_1934 - hemolysin III family channel protein (RefSeq), at 2,299,251 to 2,299,934
_1934
Shewana3_1935: Shewana3_1935 - hypothetical protein (RefSeq), at 2,300,304 to 2,301,413
_1935
Shewana3_1936: Shewana3_1936 - thiamine biosynthesis protein ThiC (RefSeq), at 2,301,846 to 2,304,008
_1936
Position (kb)
2300
2301
2302 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2299.361 kb on + strand, within Shewana3_1934 at 2299.369 kb on + strand, within Shewana3_1934 at 2299.397 kb on + strand, within Shewana3_1934 at 2299.442 kb on + strand, within Shewana3_1934 at 2299.606 kb on + strand, within Shewana3_1934 at 2299.612 kb on - strand, within Shewana3_1934 at 2299.697 kb on + strand, within Shewana3_1934 at 2299.705 kb on - strand, within Shewana3_1934 at 2299.718 kb on + strand, within Shewana3_1934 at 2299.921 kb on - strand at 2299.933 kb on - strand at 2299.933 kb on - strand at 2299.944 kb on - strand at 2300.056 kb on + strand at 2300.126 kb on - strand at 2300.409 kb on - strand at 2300.513 kb on + strand, within Shewana3_1935 at 2300.624 kb on + strand, within Shewana3_1935 at 2300.632 kb on - strand, within Shewana3_1935 at 2300.634 kb on - strand, within Shewana3_1935 at 2300.699 kb on + strand, within Shewana3_1935 at 2300.750 kb on + strand, within Shewana3_1935 at 2301.007 kb on - strand, within Shewana3_1935 at 2301.084 kb on + strand, within Shewana3_1935 at 2301.388 kb on - strand at 2301.605 kb on + strand at 2301.658 kb on - strand at 2301.722 kb on + strand at 2301.729 kb on - strand at 2301.792 kb on + strand at 2301.889 kb on + strand at 2301.946 kb on + strand at 2301.947 kb on + strand at 2301.954 kb on - strand at 2301.955 kb on - strand at 2302.070 kb on + strand, within Shewana3_1936 at 2302.078 kb on - strand, within Shewana3_1936 at 2302.101 kb on + strand, within Shewana3_1936 at 2302.118 kb on + strand, within Shewana3_1936 at 2302.118 kb on + strand, within Shewana3_1936 at 2302.126 kb on - strand, within Shewana3_1936 at 2302.152 kb on + strand, within Shewana3_1936 at 2302.152 kb on + strand, within Shewana3_1936
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,299,361 + Shewana3_1934 0.16 +2.9 2,299,369 + Shewana3_1934 0.17 +1.3 2,299,397 + Shewana3_1934 0.21 +1.9 2,299,442 + Shewana3_1934 0.28 +0.9 2,299,606 + Shewana3_1934 0.52 +1.3 2,299,612 - Shewana3_1934 0.53 +0.3 2,299,697 + Shewana3_1934 0.65 +0.5 2,299,705 - Shewana3_1934 0.66 -1.2 2,299,718 + Shewana3_1934 0.68 -0.8 2,299,921 - -0.8 2,299,933 - +2.9 2,299,933 - +0.9 2,299,944 - +1.3 2,300,056 + +0.0 2,300,126 - +0.0 2,300,409 - +1.9 2,300,513 + Shewana3_1935 0.19 +0.0 2,300,624 + Shewana3_1935 0.29 +1.1 2,300,632 - Shewana3_1935 0.30 -0.4 2,300,634 - Shewana3_1935 0.30 +0.5 2,300,699 + Shewana3_1935 0.36 +1.9 2,300,750 + Shewana3_1935 0.40 +1.3 2,301,007 - Shewana3_1935 0.63 +1.5 2,301,084 + Shewana3_1935 0.70 +1.0 2,301,388 - +0.9 2,301,605 + +1.9 2,301,658 - +1.9 2,301,722 + +1.9 2,301,729 - +0.3 2,301,792 + +0.5 2,301,889 + +1.3 2,301,946 + +1.3 2,301,947 + +0.1 2,301,954 - -0.1 2,301,955 - -0.1 2,302,070 + Shewana3_1936 0.10 +0.3 2,302,078 - Shewana3_1936 0.11 -0.3 2,302,101 + Shewana3_1936 0.12 +1.3 2,302,118 + Shewana3_1936 0.13 +0.5 2,302,118 + Shewana3_1936 0.13 +0.9 2,302,126 - Shewana3_1936 0.13 +0.4 2,302,152 + Shewana3_1936 0.14 +0.9 2,302,152 + Shewana3_1936 0.14 +1.3
Or see this region's nucleotide sequence