Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1895 and Shewana3_1896 are separated by 249 nucleotides Shewana3_1896 and Shewana3_1897 are separated by 128 nucleotides
Shewana3_1895: Shewana3_1895 - peptidase T2, asparaginase 2 (RefSeq), at 2,248,595 to 2,249,626
_1895
Shewana3_1896: Shewana3_1896 - signal transduction protein (RefSeq), at 2,249,876 to 2,250,292
_1896
Shewana3_1897: Shewana3_1897 - ATP-dependent helicase HrpA (RefSeq), at 2,250,421 to 2,254,302
_1897
Position (kb)
2249
2250
2251 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2249.508 kb on + strand, within Shewana3_1895 at 2249.561 kb on + strand at 2249.561 kb on + strand at 2249.621 kb on - strand at 2249.683 kb on - strand at 2249.701 kb on - strand at 2249.813 kb on + strand at 2249.947 kb on - strand, within Shewana3_1896 at 2249.952 kb on - strand, within Shewana3_1896 at 2250.171 kb on + strand, within Shewana3_1896 at 2250.223 kb on + strand, within Shewana3_1896 at 2250.301 kb on + strand at 2250.606 kb on - strand at 2250.881 kb on + strand, within Shewana3_1897 at 2250.912 kb on - strand, within Shewana3_1897 at 2251.019 kb on + strand, within Shewana3_1897 at 2251.100 kb on + strand, within Shewana3_1897 at 2251.173 kb on + strand, within Shewana3_1897
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,249,508 + Shewana3_1895 0.88 -0.2 2,249,561 + +0.8 2,249,561 + +0.9 2,249,621 - +0.9 2,249,683 - +0.2 2,249,701 - -0.4 2,249,813 + +1.4 2,249,947 - Shewana3_1896 0.17 +2.8 2,249,952 - Shewana3_1896 0.18 +0.5 2,250,171 + Shewana3_1896 0.71 -2.0 2,250,223 + Shewana3_1896 0.83 -1.3 2,250,301 + -0.6 2,250,606 - -0.4 2,250,881 + Shewana3_1897 0.12 +0.2 2,250,912 - Shewana3_1897 0.13 +1.8 2,251,019 + Shewana3_1897 0.15 -0.4 2,251,100 + Shewana3_1897 0.17 +0.6 2,251,173 + Shewana3_1897 0.19 +0.7
Or see this region's nucleotide sequence