Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1838
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,179,008 | + | Shewana3_1837 | 0.29 | +0.5 | |
2,179,042 | + | Shewana3_1837 | 0.32 | +1.8 | |
2,179,223 | + | Shewana3_1837 | 0.48 | +2.1 | |
2,179,231 | - | Shewana3_1837 | 0.48 | +1.2 | |
2,179,407 | + | Shewana3_1837 | 0.64 | +1.2 | |
2,179,508 | + | Shewana3_1837 | 0.73 | +2.4 | |
2,179,523 | + | Shewana3_1837 | 0.74 | +2.4 | |
2,179,841 | - | +0.0 | |||
2,180,019 | - | -1.0 | |||
2,180,024 | + | +0.9 | |||
2,180,103 | + | Shewana3_1838 | 0.19 | -0.3 | |
2,180,108 | + | Shewana3_1838 | 0.19 | +0.1 | |
2,180,421 | + | Shewana3_1838 | 0.56 | -0.0 | |
2,180,713 | - | +2.8 | |||
2,180,756 | + | +0.4 | |||
2,180,791 | + | +0.9 | |||
2,180,823 | + | -0.5 | |||
2,181,045 | + | +2.8 | |||
2,181,053 | - | +1.1 | |||
2,181,076 | - | -1.7 | |||
2,181,415 | + | Shewana3_1839 | 0.34 | +0.5 | |
2,181,472 | - | Shewana3_1839 | 0.40 | +0.5 | |
2,181,757 | + | Shewana3_1839 | 0.74 | -0.5 | |
2,181,767 | + | Shewana3_1839 | 0.75 | -1.3 |
Or see this region's nucleotide sequence