Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1832 and Shewana3_1833 overlap by 13 nucleotides Shewana3_1833 and Shewana3_1834 are separated by 93 nucleotides Shewana3_1834 and Shewana3_1835 are separated by 283 nucleotides
Shewana3_1832: Shewana3_1832 - DNA-repair protein (RefSeq), at 2,173,136 to 2,174,392
_1832
Shewana3_1833: Shewana3_1833 - putative prophage repressor (RefSeq), at 2,174,380 to 2,175,204
_1833
Shewana3_1834: Shewana3_1834 - hypothetical protein (RefSeq), at 2,175,298 to 2,175,942
_1834
Shewana3_1835: Shewana3_1835 - FAD dependent oxidoreductase (RefSeq), at 2,176,226 to 2,177,515
_1835
Position (kb)
2175
2176 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2174.402 kb on - strand at 2174.720 kb on + strand, within Shewana3_1833 at 2174.735 kb on - strand, within Shewana3_1833 at 2174.786 kb on + strand, within Shewana3_1833 at 2175.004 kb on - strand, within Shewana3_1833 at 2175.028 kb on - strand, within Shewana3_1833 at 2175.028 kb on - strand, within Shewana3_1833 at 2175.048 kb on - strand, within Shewana3_1833 at 2175.518 kb on + strand, within Shewana3_1834 at 2175.526 kb on - strand, within Shewana3_1834 at 2175.526 kb on - strand, within Shewana3_1834 at 2175.591 kb on + strand, within Shewana3_1834 at 2175.591 kb on + strand, within Shewana3_1834 at 2175.593 kb on + strand, within Shewana3_1834 at 2175.635 kb on + strand, within Shewana3_1834 at 2175.635 kb on + strand, within Shewana3_1834 at 2175.841 kb on + strand, within Shewana3_1834 at 2175.841 kb on + strand, within Shewana3_1834 at 2175.900 kb on - strand at 2176.041 kb on + strand at 2176.049 kb on - strand at 2176.113 kb on - strand at 2176.510 kb on - strand, within Shewana3_1835 at 2176.619 kb on + strand, within Shewana3_1835 at 2176.698 kb on + strand, within Shewana3_1835 at 2176.725 kb on + strand, within Shewana3_1835 at 2176.914 kb on - strand, within Shewana3_1835
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,174,402 - -1.6 2,174,720 + Shewana3_1833 0.41 +1.8 2,174,735 - Shewana3_1833 0.43 +1.2 2,174,786 + Shewana3_1833 0.49 +0.5 2,175,004 - Shewana3_1833 0.76 -1.9 2,175,028 - Shewana3_1833 0.79 +0.2 2,175,028 - Shewana3_1833 0.79 -1.0 2,175,048 - Shewana3_1833 0.81 +1.1 2,175,518 + Shewana3_1834 0.34 +0.7 2,175,526 - Shewana3_1834 0.35 +0.5 2,175,526 - Shewana3_1834 0.35 +2.8 2,175,591 + Shewana3_1834 0.45 +0.5 2,175,591 + Shewana3_1834 0.45 +0.2 2,175,593 + Shewana3_1834 0.46 +0.4 2,175,635 + Shewana3_1834 0.52 -1.5 2,175,635 + Shewana3_1834 0.52 -0.2 2,175,841 + Shewana3_1834 0.84 -0.8 2,175,841 + Shewana3_1834 0.84 +1.8 2,175,900 - +1.8 2,176,041 + +1.2 2,176,049 - +1.2 2,176,113 - -0.3 2,176,510 - Shewana3_1835 0.22 -1.2 2,176,619 + Shewana3_1835 0.30 +0.5 2,176,698 + Shewana3_1835 0.37 -0.1 2,176,725 + Shewana3_1835 0.39 +0.5 2,176,914 - Shewana3_1835 0.53 +0.8
Or see this region's nucleotide sequence