Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1804 and Shewana3_1805 are separated by 335 nucleotides Shewana3_1805 and Shewana3_1806 overlap by 23 nucleotides Shewana3_1806 and Shewana3_1807 are separated by 8 nucleotides
Shewana3_1804: Shewana3_1804 - DNA repair protein RadC (RefSeq), at 2,129,918 to 2,130,424
_1804
Shewana3_1805: Shewana3_1805 - MerR family transcriptional regulator (RefSeq), at 2,130,760 to 2,131,212
_1805
Shewana3_1806: Shewana3_1806 - vault protein inter-alpha-trypsin subunit (RefSeq), at 2,131,190 to 2,132,206
_1806
Shewana3_1807: Shewana3_1807 - hypothetical protein (RefSeq), at 2,132,215 to 2,133,363
_1807
Position (kb)
2131
2132
2133 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2130.226 kb on + strand, within Shewana3_1804 at 2130.249 kb on - strand, within Shewana3_1804 at 2130.317 kb on - strand, within Shewana3_1804 at 2130.329 kb on + strand, within Shewana3_1804 at 2130.329 kb on + strand, within Shewana3_1804 at 2130.329 kb on + strand, within Shewana3_1804 at 2130.337 kb on - strand, within Shewana3_1804 at 2130.337 kb on - strand, within Shewana3_1804 at 2130.433 kb on + strand at 2130.441 kb on - strand at 2130.441 kb on - strand at 2130.441 kb on - strand at 2130.450 kb on + strand at 2130.503 kb on - strand at 2130.603 kb on + strand at 2130.603 kb on + strand at 2130.630 kb on - strand at 2130.631 kb on - strand at 2130.748 kb on - strand at 2130.824 kb on + strand, within Shewana3_1805 at 2130.932 kb on + strand, within Shewana3_1805 at 2131.005 kb on + strand, within Shewana3_1805 at 2131.087 kb on + strand, within Shewana3_1805 at 2131.094 kb on + strand, within Shewana3_1805 at 2131.095 kb on - strand, within Shewana3_1805 at 2131.095 kb on - strand, within Shewana3_1805 at 2131.136 kb on + strand, within Shewana3_1805 at 2131.288 kb on + strand at 2131.299 kb on - strand, within Shewana3_1806 at 2131.437 kb on - strand, within Shewana3_1806 at 2131.498 kb on - strand, within Shewana3_1806 at 2131.514 kb on - strand, within Shewana3_1806 at 2131.527 kb on - strand, within Shewana3_1806 at 2131.601 kb on + strand, within Shewana3_1806 at 2131.947 kb on - strand, within Shewana3_1806 at 2132.071 kb on + strand, within Shewana3_1806 at 2132.377 kb on + strand, within Shewana3_1807 at 2132.380 kb on - strand, within Shewana3_1807 at 2132.421 kb on + strand, within Shewana3_1807 at 2132.577 kb on + strand, within Shewana3_1807 at 2132.861 kb on + strand, within Shewana3_1807 at 2132.861 kb on - strand at 2132.941 kb on + strand, within Shewana3_1807 at 2132.949 kb on - strand, within Shewana3_1807
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,130,226 + Shewana3_1804 0.61 -0.1 2,130,249 - Shewana3_1804 0.65 +1.7 2,130,317 - Shewana3_1804 0.79 +0.8 2,130,329 + Shewana3_1804 0.81 -0.2 2,130,329 + Shewana3_1804 0.81 +0.1 2,130,329 + Shewana3_1804 0.81 -1.1 2,130,337 - Shewana3_1804 0.83 +0.4 2,130,337 - Shewana3_1804 0.83 +0.5 2,130,433 + +0.3 2,130,441 - -0.1 2,130,441 - +1.8 2,130,441 - +0.2 2,130,450 + +2.8 2,130,503 - +1.8 2,130,603 + +0.4 2,130,603 + -0.1 2,130,630 - +1.2 2,130,631 - +0.8 2,130,748 - +1.8 2,130,824 + Shewana3_1805 0.14 +1.1 2,130,932 + Shewana3_1805 0.38 +0.8 2,131,005 + Shewana3_1805 0.54 -0.8 2,131,087 + Shewana3_1805 0.72 +0.5 2,131,094 + Shewana3_1805 0.74 +1.8 2,131,095 - Shewana3_1805 0.74 -1.1 2,131,095 - Shewana3_1805 0.74 -1.9 2,131,136 + Shewana3_1805 0.83 +0.6 2,131,288 + -0.9 2,131,299 - Shewana3_1806 0.11 +2.8 2,131,437 - Shewana3_1806 0.24 +0.5 2,131,498 - Shewana3_1806 0.30 -0.2 2,131,514 - Shewana3_1806 0.32 -1.6 2,131,527 - Shewana3_1806 0.33 +0.5 2,131,601 + Shewana3_1806 0.40 +2.2 2,131,947 - Shewana3_1806 0.74 -1.6 2,132,071 + Shewana3_1806 0.87 +0.8 2,132,377 + Shewana3_1807 0.14 +0.1 2,132,380 - Shewana3_1807 0.14 +1.2 2,132,421 + Shewana3_1807 0.18 +1.2 2,132,577 + Shewana3_1807 0.32 +0.0 2,132,861 + Shewana3_1807 0.56 +0.8 2,132,861 - +2.8 2,132,941 + Shewana3_1807 0.63 -0.3 2,132,949 - Shewana3_1807 0.64 +1.8
Or see this region's nucleotide sequence