Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1775 and Shewana3_1776 are separated by 15 nucleotides Shewana3_1776 and Shewana3_1777 are separated by 275 nucleotides Shewana3_1777 and Shewana3_1778 are separated by 28 nucleotides
Shewana3_1775: Shewana3_1775 - YebG family protein (RefSeq), at 2,090,757 to 2,091,056
_1775
Shewana3_1776: Shewana3_1776 - putative GAF sensor protein (RefSeq), at 2,091,072 to 2,091,530
_1776
Shewana3_1777: Shewana3_1777 - putative solute/DNA competence effector (RefSeq), at 2,091,806 to 2,092,450
_1777
Shewana3_1778: Shewana3_1778 - carboxy-terminal protease (RefSeq), at 2,092,479 to 2,094,530
_1778
Position (kb)
2091
2092
2093 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2090.847 kb on + strand, within Shewana3_1775 at 2090.875 kb on - strand, within Shewana3_1775 at 2091.269 kb on - strand, within Shewana3_1776 at 2091.281 kb on + strand, within Shewana3_1776 at 2091.281 kb on + strand, within Shewana3_1776 at 2091.281 kb on + strand, within Shewana3_1776 at 2091.567 kb on + strand at 2091.586 kb on - strand at 2091.629 kb on - strand at 2091.725 kb on + strand at 2091.954 kb on + strand, within Shewana3_1777 at 2092.047 kb on + strand, within Shewana3_1777 at 2092.076 kb on + strand, within Shewana3_1777 at 2092.402 kb on + strand at 2092.851 kb on + strand, within Shewana3_1778 at 2092.889 kb on + strand, within Shewana3_1778
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,090,847 + Shewana3_1775 0.30 +2.2 2,090,875 - Shewana3_1775 0.39 -0.4 2,091,269 - Shewana3_1776 0.43 +2.8 2,091,281 + Shewana3_1776 0.46 +1.0 2,091,281 + Shewana3_1776 0.46 +1.7 2,091,281 + Shewana3_1776 0.46 +0.2 2,091,567 + +0.9 2,091,586 - +2.8 2,091,629 - +1.8 2,091,725 + +0.8 2,091,954 + Shewana3_1777 0.23 +1.3 2,092,047 + Shewana3_1777 0.37 +0.4 2,092,076 + Shewana3_1777 0.42 +1.5 2,092,402 + +1.4 2,092,851 + Shewana3_1778 0.18 +1.6 2,092,889 + Shewana3_1778 0.20 +1.1
Or see this region's nucleotide sequence