Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1699 and Shewana3_1700 are separated by 155 nucleotides Shewana3_1700 and Shewana3_1701 are separated by 268 nucleotides Shewana3_1701 and Shewana3_1702 are separated by 159 nucleotides
Shewana3_1699: Shewana3_1699 - MATE efflux family protein (RefSeq), at 1,997,135 to 1,998,697
_1699
Shewana3_1700: Shewana3_1700 - hypothetical protein (RefSeq), at 1,998,853 to 1,999,071
_1700
Shewana3_1701: Shewana3_1701 - hypothetical protein (RefSeq), at 1,999,340 to 1,999,672
_1701
Shewana3_1702: Shewana3_1702 - acriflavin resistance protein (RefSeq), at 1,999,832 to 2,002,888
_1702
Position (kb)
1998
1999
2000 Strain fitness (log2 ratio)
-1
0
1
2 at 1998.154 kb on + strand, within Shewana3_1699 at 1998.282 kb on + strand, within Shewana3_1699 at 1998.376 kb on - strand, within Shewana3_1699 at 1998.383 kb on + strand, within Shewana3_1699 at 1998.391 kb on - strand, within Shewana3_1699 at 1998.406 kb on + strand, within Shewana3_1699 at 1998.452 kb on + strand, within Shewana3_1699 at 1998.516 kb on - strand, within Shewana3_1699 at 1998.516 kb on - strand, within Shewana3_1699 at 1998.817 kb on + strand at 1998.858 kb on - strand at 1998.865 kb on + strand at 1998.871 kb on - strand at 1998.981 kb on + strand, within Shewana3_1700 at 1998.981 kb on + strand, within Shewana3_1700 at 1999.037 kb on + strand, within Shewana3_1700 at 1999.553 kb on - strand, within Shewana3_1701 at 1999.606 kb on - strand, within Shewana3_1701 at 1999.847 kb on - strand at 1999.880 kb on - strand at 1999.910 kb on + strand at 1999.916 kb on - strand at 1999.918 kb on - strand at 1999.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,998,154 + Shewana3_1699 0.65 -1.3 1,998,282 + Shewana3_1699 0.73 -1.4 1,998,376 - Shewana3_1699 0.79 -0.9 1,998,383 + Shewana3_1699 0.80 +0.0 1,998,391 - Shewana3_1699 0.80 +2.7 1,998,406 + Shewana3_1699 0.81 -0.3 1,998,452 + Shewana3_1699 0.84 +0.8 1,998,516 - Shewana3_1699 0.88 +1.1 1,998,516 - Shewana3_1699 0.88 -0.3 1,998,817 + +2.7 1,998,858 - -1.7 1,998,865 + +2.7 1,998,871 - +1.0 1,998,981 + Shewana3_1700 0.58 +0.1 1,998,981 + Shewana3_1700 0.58 +1.7 1,999,037 + Shewana3_1700 0.84 +0.7 1,999,553 - Shewana3_1701 0.64 -0.7 1,999,606 - Shewana3_1701 0.80 +0.4 1,999,847 - +0.5 1,999,880 - +0.6 1,999,910 + +0.7 1,999,916 - +0.1 1,999,918 - +0.9 1,999,962 - -0.0
Or see this region's nucleotide sequence