Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1695 and Shewana3_1696 are separated by 102 nucleotides Shewana3_1696 and Shewana3_1697 are separated by 81 nucleotides Shewana3_1697 and Shewana3_1698 are separated by 209 nucleotides
Shewana3_1695: Shewana3_1695 - cupin 2 domain-containing protein (RefSeq), at 1,994,139 to 1,994,576
_1695
Shewana3_1696: Shewana3_1696 - hypothetical protein (RefSeq), at 1,994,679 to 1,995,053
_1696
Shewana3_1697: Shewana3_1697 - cupin 2 domain-containing protein (RefSeq), at 1,995,135 to 1,995,674
_1697
Shewana3_1698: Shewana3_1698 - AraC family transcriptional regulator (RefSeq), at 1,995,884 to 1,996,792
_1698
Position (kb)
1995
1996 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1994.319 kb on - strand, within Shewana3_1695 at 1994.530 kb on - strand, within Shewana3_1695 at 1994.783 kb on + strand, within Shewana3_1696 at 1994.812 kb on + strand, within Shewana3_1696 at 1994.965 kb on - strand, within Shewana3_1696 at 1995.049 kb on - strand at 1995.270 kb on + strand, within Shewana3_1697 at 1995.398 kb on + strand, within Shewana3_1697 at 1995.553 kb on + strand, within Shewana3_1697 at 1995.750 kb on - strand at 1996.072 kb on + strand, within Shewana3_1698 at 1996.080 kb on - strand, within Shewana3_1698 at 1996.088 kb on - strand, within Shewana3_1698 at 1996.546 kb on - strand, within Shewana3_1698
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,994,319 - Shewana3_1695 0.41 -1.0 1,994,530 - Shewana3_1695 0.89 +2.7 1,994,783 + Shewana3_1696 0.28 +2.0 1,994,812 + Shewana3_1696 0.35 -0.0 1,994,965 - Shewana3_1696 0.76 +1.7 1,995,049 - -0.5 1,995,270 + Shewana3_1697 0.25 +0.3 1,995,398 + Shewana3_1697 0.49 +1.7 1,995,553 + Shewana3_1697 0.77 -1.0 1,995,750 - -1.9 1,996,072 + Shewana3_1698 0.21 -1.0 1,996,080 - Shewana3_1698 0.22 +0.1 1,996,088 - Shewana3_1698 0.22 -1.0 1,996,546 - Shewana3_1698 0.73 +1.1
Or see this region's nucleotide sequence