Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1669 and Shewana3_1670 overlap by 1 nucleotides Shewana3_1670 and Shewana3_1671 are separated by 44 nucleotides
Shewana3_1669: Shewana3_1669 - 3-methylcrotonoyl-CoA carboxylase, alpha subunit (RefSeq), at 1,960,021 to 1,962,045
_1669
Shewana3_1670: Shewana3_1670 - methylglutaconyl-CoA hydratase (RefSeq), at 1,962,045 to 1,962,905
_1670
Shewana3_1671: Shewana3_1671 - carboxyl transferase (RefSeq), at 1,962,950 to 1,964,557
_1671
Position (kb)
1962
1963 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1961.133 kb on - strand, within Shewana3_1669 at 1961.397 kb on - strand, within Shewana3_1669 at 1961.578 kb on - strand, within Shewana3_1669 at 1961.757 kb on + strand, within Shewana3_1669 at 1961.797 kb on + strand, within Shewana3_1669 at 1961.797 kb on + strand, within Shewana3_1669 at 1961.821 kb on + strand, within Shewana3_1669 at 1961.972 kb on + strand at 1961.972 kb on + strand at 1961.972 kb on + strand at 1961.980 kb on - strand at 1962.083 kb on - strand at 1962.252 kb on - strand, within Shewana3_1670 at 1962.270 kb on + strand, within Shewana3_1670 at 1962.359 kb on + strand, within Shewana3_1670 at 1962.406 kb on + strand, within Shewana3_1670 at 1962.526 kb on + strand, within Shewana3_1670 at 1962.577 kb on + strand, within Shewana3_1670 at 1962.653 kb on - strand, within Shewana3_1670 at 1962.774 kb on + strand, within Shewana3_1670 at 1962.867 kb on - strand at 1963.355 kb on - strand, within Shewana3_1671 at 1963.417 kb on + strand, within Shewana3_1671 at 1963.574 kb on + strand, within Shewana3_1671 at 1963.582 kb on - strand, within Shewana3_1671 at 1963.693 kb on - strand, within Shewana3_1671 at 1963.725 kb on - strand, within Shewana3_1671 at 1963.766 kb on + strand, within Shewana3_1671 at 1963.786 kb on + strand, within Shewana3_1671 at 1963.786 kb on + strand at 1963.794 kb on - strand, within Shewana3_1671 at 1963.794 kb on - strand, within Shewana3_1671 at 1963.794 kb on - strand, within Shewana3_1671
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,961,133 - Shewana3_1669 0.55 -0.7 1,961,397 - Shewana3_1669 0.68 +0.0 1,961,578 - Shewana3_1669 0.77 +0.2 1,961,757 + Shewana3_1669 0.86 +1.1 1,961,797 + Shewana3_1669 0.88 -0.5 1,961,797 + Shewana3_1669 0.88 +0.6 1,961,821 + Shewana3_1669 0.89 -0.4 1,961,972 + +1.6 1,961,972 + +0.1 1,961,972 + +2.6 1,961,980 - -2.2 1,962,083 - +1.0 1,962,252 - Shewana3_1670 0.24 +1.9 1,962,270 + Shewana3_1670 0.26 -0.1 1,962,359 + Shewana3_1670 0.36 +1.6 1,962,406 + Shewana3_1670 0.42 -0.4 1,962,526 + Shewana3_1670 0.56 +2.6 1,962,577 + Shewana3_1670 0.62 +0.3 1,962,653 - Shewana3_1670 0.71 +3.0 1,962,774 + Shewana3_1670 0.85 -0.4 1,962,867 - +0.6 1,963,355 - Shewana3_1671 0.25 +0.2 1,963,417 + Shewana3_1671 0.29 +0.3 1,963,574 + Shewana3_1671 0.39 -1.4 1,963,582 - Shewana3_1671 0.39 +0.1 1,963,693 - Shewana3_1671 0.46 +0.2 1,963,725 - Shewana3_1671 0.48 -1.7 1,963,766 + Shewana3_1671 0.51 -0.7 1,963,786 + Shewana3_1671 0.52 -0.7 1,963,786 + +1.6 1,963,794 - Shewana3_1671 0.52 +2.6 1,963,794 - Shewana3_1671 0.52 +0.3 1,963,794 - Shewana3_1671 0.52 -0.2
Or see this region's nucleotide sequence