Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1660 and Shewana3_1661 overlap by 1 nucleotides Shewana3_1661 and Shewana3_1662 are separated by 72 nucleotides Shewana3_1662 and Shewana3_1663 are separated by 225 nucleotides Shewana3_1663 and Shewana3_1664 are separated by 35 nucleotides
Shewana3_1660: Shewana3_1660 - GCN5-related N-acetyltransferase (RefSeq), at 1,952,884 to 1,953,318
_1660
Shewana3_1661: Shewana3_1661 - negative transcriptional regulator (RefSeq), at 1,953,318 to 1,954,001
_1661
Shewana3_1662: Shewana3_1662 - hypothetical protein (RefSeq), at 1,954,074 to 1,954,829
_1662
Shewana3_1663: Shewana3_1663 - hypothetical protein (RefSeq), at 1,955,055 to 1,955,366
_1663
Shewana3_1664: Shewana3_1664 - ThiJ/PfpI domain-containing protein (RefSeq), at 1,955,402 to 1,956,004
_1664
Position (kb)
1954
1955 Strain fitness (log2 ratio)
-1
0
1
2 at 1953.078 kb on + strand, within Shewana3_1660 at 1953.239 kb on - strand, within Shewana3_1660 at 1953.280 kb on - strand at 1953.401 kb on + strand, within Shewana3_1661 at 1953.431 kb on - strand, within Shewana3_1661 at 1953.665 kb on - strand, within Shewana3_1661 at 1953.833 kb on - strand, within Shewana3_1661 at 1953.845 kb on + strand, within Shewana3_1661 at 1953.845 kb on + strand, within Shewana3_1661 at 1953.853 kb on - strand, within Shewana3_1661 at 1953.853 kb on - strand, within Shewana3_1661 at 1953.853 kb on - strand, within Shewana3_1661 at 1953.853 kb on - strand, within Shewana3_1661 at 1953.853 kb on - strand, within Shewana3_1661 at 1953.967 kb on + strand at 1953.967 kb on + strand at 1954.165 kb on + strand, within Shewana3_1662 at 1954.213 kb on - strand, within Shewana3_1662 at 1954.228 kb on + strand, within Shewana3_1662 at 1954.269 kb on - strand, within Shewana3_1662 at 1954.269 kb on - strand, within Shewana3_1662 at 1954.328 kb on + strand, within Shewana3_1662 at 1954.328 kb on + strand, within Shewana3_1662 at 1954.552 kb on + strand, within Shewana3_1662 at 1954.794 kb on + strand at 1954.990 kb on + strand at 1955.207 kb on - strand, within Shewana3_1663
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,953,078 + Shewana3_1660 0.45 +2.6 1,953,239 - Shewana3_1660 0.82 +0.9 1,953,280 - +1.1 1,953,401 + Shewana3_1661 0.12 -0.9 1,953,431 - Shewana3_1661 0.17 +0.3 1,953,665 - Shewana3_1661 0.51 +1.8 1,953,833 - Shewana3_1661 0.75 -0.2 1,953,845 + Shewana3_1661 0.77 +1.1 1,953,845 + Shewana3_1661 0.77 +1.1 1,953,853 - Shewana3_1661 0.78 -0.2 1,953,853 - Shewana3_1661 0.78 -1.1 1,953,853 - Shewana3_1661 0.78 -1.3 1,953,853 - Shewana3_1661 0.78 +0.5 1,953,853 - Shewana3_1661 0.78 +0.6 1,953,967 + +1.1 1,953,967 + +1.1 1,954,165 + Shewana3_1662 0.12 +0.1 1,954,213 - Shewana3_1662 0.18 +1.1 1,954,228 + Shewana3_1662 0.20 -1.6 1,954,269 - Shewana3_1662 0.26 -1.3 1,954,269 - Shewana3_1662 0.26 -1.1 1,954,328 + Shewana3_1662 0.34 +1.6 1,954,328 + Shewana3_1662 0.34 -0.4 1,954,552 + Shewana3_1662 0.63 +1.1 1,954,794 + +0.8 1,954,990 + +1.6 1,955,207 - Shewana3_1663 0.49 +0.3
Or see this region's nucleotide sequence