Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1556 and Shewana3_1557 are separated by 253 nucleotides Shewana3_1557 and Shewana3_1558 are separated by 169 nucleotides
Shewana3_1556: Shewana3_1556 - methionine gamma-lyase (RefSeq), at 1,814,601 to 1,815,575
_1556
Shewana3_1557: Shewana3_1557 - hypothetical protein (RefSeq), at 1,815,829 to 1,817,397
_1557
Shewana3_1558: Shewana3_1558 - TonB-dependent receptor (RefSeq), at 1,817,567 to 1,820,218
_1558
Position (kb)
1815
1816
1817
1818 Strain fitness (log2 ratio)
-1
0
1
2 at 1815.043 kb on + strand, within Shewana3_1556 at 1815.108 kb on + strand, within Shewana3_1556 at 1815.275 kb on + strand, within Shewana3_1556 at 1815.412 kb on + strand, within Shewana3_1556 at 1815.463 kb on + strand, within Shewana3_1556 at 1815.705 kb on + strand at 1815.843 kb on + strand at 1815.843 kb on - strand at 1815.912 kb on - strand at 1815.930 kb on - strand at 1815.936 kb on - strand at 1816.031 kb on - strand, within Shewana3_1557 at 1816.053 kb on + strand, within Shewana3_1557 at 1816.097 kb on + strand, within Shewana3_1557 at 1816.105 kb on - strand, within Shewana3_1557 at 1816.122 kb on + strand, within Shewana3_1557 at 1816.122 kb on + strand, within Shewana3_1557 at 1816.122 kb on + strand, within Shewana3_1557 at 1816.122 kb on + strand, within Shewana3_1557 at 1816.122 kb on + strand, within Shewana3_1557 at 1816.122 kb on + strand, within Shewana3_1557 at 1816.122 kb on + strand, within Shewana3_1557 at 1816.130 kb on - strand, within Shewana3_1557 at 1816.130 kb on - strand, within Shewana3_1557 at 1816.414 kb on + strand, within Shewana3_1557 at 1816.754 kb on - strand, within Shewana3_1557 at 1816.839 kb on + strand, within Shewana3_1557 at 1816.855 kb on + strand, within Shewana3_1557 at 1816.891 kb on - strand, within Shewana3_1557 at 1816.991 kb on + strand, within Shewana3_1557 at 1816.999 kb on - strand, within Shewana3_1557 at 1817.034 kb on - strand, within Shewana3_1557 at 1817.044 kb on - strand, within Shewana3_1557 at 1817.081 kb on + strand, within Shewana3_1557 at 1817.367 kb on - strand at 1817.641 kb on + strand at 1817.649 kb on - strand at 1817.892 kb on + strand, within Shewana3_1558 at 1818.040 kb on - strand, within Shewana3_1558 at 1818.328 kb on + strand, within Shewana3_1558
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,815,043 + Shewana3_1556 0.45 +0.2 1,815,108 + Shewana3_1556 0.52 +1.3 1,815,275 + Shewana3_1556 0.69 +0.5 1,815,412 + Shewana3_1556 0.83 +0.1 1,815,463 + Shewana3_1556 0.88 +0.7 1,815,705 + +0.0 1,815,843 + +0.1 1,815,843 - +0.0 1,815,912 - -0.6 1,815,930 - -1.3 1,815,936 - +0.4 1,816,031 - Shewana3_1557 0.13 +0.3 1,816,053 + Shewana3_1557 0.14 +0.6 1,816,097 + Shewana3_1557 0.17 +0.4 1,816,105 - Shewana3_1557 0.18 -0.7 1,816,122 + Shewana3_1557 0.19 +0.1 1,816,122 + Shewana3_1557 0.19 -1.0 1,816,122 + Shewana3_1557 0.19 +0.4 1,816,122 + Shewana3_1557 0.19 -0.6 1,816,122 + Shewana3_1557 0.19 -1.1 1,816,122 + Shewana3_1557 0.19 +0.6 1,816,122 + Shewana3_1557 0.19 -0.2 1,816,130 - Shewana3_1557 0.19 +0.3 1,816,130 - Shewana3_1557 0.19 -1.0 1,816,414 + Shewana3_1557 0.37 -0.6 1,816,754 - Shewana3_1557 0.59 -0.6 1,816,839 + Shewana3_1557 0.64 -0.6 1,816,855 + Shewana3_1557 0.65 -0.6 1,816,891 - Shewana3_1557 0.68 +0.3 1,816,991 + Shewana3_1557 0.74 -1.6 1,816,999 - Shewana3_1557 0.75 +1.6 1,817,034 - Shewana3_1557 0.77 +0.0 1,817,044 - Shewana3_1557 0.77 +0.1 1,817,081 + Shewana3_1557 0.80 -0.9 1,817,367 - +2.6 1,817,641 + +0.6 1,817,649 - -0.4 1,817,892 + Shewana3_1558 0.12 -1.6 1,818,040 - Shewana3_1558 0.18 +1.8 1,818,328 + Shewana3_1558 0.29 +1.6
Or see this region's nucleotide sequence