Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1410

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1409 and Shewana3_1410 are separated by 539 nucleotidesShewana3_1410 and Shewana3_1411 are separated by 287 nucleotides Shewana3_1409: Shewana3_1409 - hypothetical protein (RefSeq), at 1,628,749 to 1,630,839 _1409 Shewana3_1410: Shewana3_1410 - thymidine kinase (RefSeq), at 1,631,379 to 1,631,957 _1410 Shewana3_1411: Shewana3_1411 - hypothetical protein (RefSeq), at 1,632,245 to 1,635,316 _1411 Position (kb) 1631 1632Strain fitness (log2 ratio) -2 -1 0 1 2at 1630.636 kb on + strandat 1630.665 kb on + strandat 1630.708 kb on - strandat 1631.144 kb on + strandat 1631.299 kb on - strandat 1631.431 kb on - strandat 1631.476 kb on + strand, within Shewana3_1410at 1631.634 kb on - strand, within Shewana3_1410at 1632.017 kb on + strandat 1632.136 kb on - strandat 1632.136 kb on - strandat 1632.455 kb on + strandat 1632.457 kb on - strandat 1632.724 kb on + strand, within Shewana3_1411

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,630,636 + +1.3
1,630,665 + -0.6
1,630,708 - +1.3
1,631,144 + -0.9
1,631,299 - +0.3
1,631,431 - +2.3
1,631,476 + Shewana3_1410 0.17 +0.6
1,631,634 - Shewana3_1410 0.44 -2.0
1,632,017 + -0.1
1,632,136 - +2.3
1,632,136 - +2.3
1,632,455 + +0.6
1,632,457 - -0.3
1,632,724 + Shewana3_1411 0.16 -0.4

Or see this region's nucleotide sequence