Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1398 and Shewana3_1399 are separated by 198 nucleotides Shewana3_1399 and Shewana3_1400 are separated by 0 nucleotides Shewana3_1400 and Shewana3_1401 are separated by 94 nucleotides
Shewana3_1398: Shewana3_1398 - prolyl-tRNA synthetase (RefSeq), at 1,613,601 to 1,615,313
_1398
Shewana3_1399: Shewana3_1399 - hexapaptide repeat-containing transferase (RefSeq), at 1,615,512 to 1,616,141
_1399
Shewana3_1400: Shewana3_1400 - hypothetical protein (RefSeq), at 1,616,142 to 1,616,876
_1400
Shewana3_1401: Shewana3_1401 - putative lipoprotein (RefSeq), at 1,616,971 to 1,617,351
_1401
Position (kb)
1615
1616
1617 Strain fitness (log2 ratio)
-2
-1
0
1 at 1615.531 kb on + strand at 1615.599 kb on - strand, within Shewana3_1399 at 1615.687 kb on + strand, within Shewana3_1399 at 1615.701 kb on - strand, within Shewana3_1399 at 1615.771 kb on - strand, within Shewana3_1399 at 1616.074 kb on + strand, within Shewana3_1399 at 1616.356 kb on + strand, within Shewana3_1400 at 1616.709 kb on - strand, within Shewana3_1400 at 1616.831 kb on + strand at 1616.955 kb on + strand at 1616.963 kb on - strand at 1617.028 kb on + strand, within Shewana3_1401 at 1617.028 kb on + strand, within Shewana3_1401 at 1617.036 kb on - strand, within Shewana3_1401
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,615,531 + +0.3 1,615,599 - Shewana3_1399 0.14 -1.0 1,615,687 + Shewana3_1399 0.28 +0.7 1,615,701 - Shewana3_1399 0.30 -0.9 1,615,771 - Shewana3_1399 0.41 -2.3 1,616,074 + Shewana3_1399 0.89 -0.0 1,616,356 + Shewana3_1400 0.29 -0.1 1,616,709 - Shewana3_1400 0.77 -1.5 1,616,831 + -1.2 1,616,955 + +0.1 1,616,963 - -1.1 1,617,028 + Shewana3_1401 0.15 -0.3 1,617,028 + Shewana3_1401 0.15 -1.1 1,617,036 - Shewana3_1401 0.17 +0.5
Or see this region's nucleotide sequence