Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1397 and Shewana3_1398 are separated by 263 nucleotides Shewana3_1398 and Shewana3_1399 are separated by 198 nucleotides Shewana3_1399 and Shewana3_1400 are separated by 0 nucleotides
Shewana3_1397: Shewana3_1397 - patatin (RefSeq), at 1,612,213 to 1,613,337
_1397
Shewana3_1398: Shewana3_1398 - prolyl-tRNA synthetase (RefSeq), at 1,613,601 to 1,615,313
_1398
Shewana3_1399: Shewana3_1399 - hexapaptide repeat-containing transferase (RefSeq), at 1,615,512 to 1,616,141
_1399
Shewana3_1400: Shewana3_1400 - hypothetical protein (RefSeq), at 1,616,142 to 1,616,876
_1400
Position (kb) 1613
1614
1615
1616 Strain fitness (log2 ratio) -2
-1
0
1 at 1613.050 kb on - strand, within Shewana3_1397 at 1613.232 kb on + strand at 1613.240 kb on - strand at 1613.314 kb on + strand at 1613.322 kb on - strand at 1613.595 kb on - strand at 1615.531 kb on + strand at 1615.599 kb on - strand, within Shewana3_1399 at 1615.687 kb on + strand, within Shewana3_1399 at 1615.701 kb on - strand, within Shewana3_1399 at 1615.771 kb on - strand, within Shewana3_1399 at 1616.074 kb on + strand, within Shewana3_1399
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,613,050 - Shewana3_1397 0.74 +0.3 1,613,232 + +0.1 1,613,240 - -0.7 1,613,314 + -0.5 1,613,322 - +0.1 1,613,595 - +1.5 1,615,531 + +0.3 1,615,599 - Shewana3_1399 0.14 -1.0 1,615,687 + Shewana3_1399 0.28 +0.7 1,615,701 - Shewana3_1399 0.30 -0.9 1,615,771 - Shewana3_1399 0.41 -2.3 1,616,074 + Shewana3_1399 0.89 -0.0
Or see this region's nucleotide sequence