Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1336
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
1,548,467 | + | Shewana3_1335 | 0.36 | +0.6 | |
1,548,569 | - | Shewana3_1335 | 0.43 | -0.4 | |
1,548,628 | + | Shewana3_1335 | 0.48 | +0.3 | |
1,548,794 | + | Shewana3_1335 | 0.60 | +1.8 | |
1,548,794 | + | Shewana3_1335 | 0.60 | +1.2 | |
1,549,254 | + | +0.3 | |||
1,549,298 | - | +2.2 | |||
1,549,321 | + | +1.0 | |||
1,549,512 | + | Shewana3_1336 | 0.45 | +1.2 | |
1,549,562 | + | Shewana3_1336 | 0.60 | +1.5 | |
1,549,571 | - | Shewana3_1336 | 0.63 | +1.2 | |
1,549,694 | + | +0.4 | |||
1,549,742 | + | fliS | Shewana3_1337 | 0.10 | +1.6 |
1,549,811 | + | fliS | Shewana3_1337 | 0.27 | +2.3 |
1,549,811 | + | fliS | Shewana3_1337 | 0.27 | +1.7 |
1,549,811 | + | fliS | Shewana3_1337 | 0.27 | +1.5 |
1,549,819 | - | fliS | Shewana3_1337 | 0.29 | +0.7 |
1,550,052 | + | fliS | Shewana3_1337 | 0.85 | +1.5 |
1,550,143 | + | +0.3 | |||
1,550,204 | - | +0.5 | |||
1,550,280 | + | -1.3 | |||
1,550,298 | - | -0.4 | |||
1,550,305 | - | -1.1 |
Or see this region's nucleotide sequence