Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1332
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
1,544,555 | - | flgL | Shewana3_1331 | 0.29 | -1.1 |
1,544,697 | + | flgL | Shewana3_1331 | 0.40 | +0.5 |
1,544,734 | + | flgL | Shewana3_1331 | 0.43 | +0.2 |
1,545,049 | + | flgL | Shewana3_1331 | 0.69 | -0.9 |
1,545,135 | + | flgL | Shewana3_1331 | 0.76 | +0.9 |
1,545,584 | + | +0.1 | |||
1,545,601 | + | +0.6 | |||
1,545,629 | + | Shewana3_1332 | 0.13 | +0.9 | |
1,545,700 | + | Shewana3_1332 | 0.22 | +0.4 | |
1,545,700 | + | Shewana3_1332 | 0.22 | +0.5 | |
1,545,713 | - | Shewana3_1332 | 0.23 | -0.4 | |
1,546,130 | - | Shewana3_1332 | 0.74 | +0.9 | |
1,546,221 | + | Shewana3_1332 | 0.85 | +1.1 | |
1,546,244 | - | Shewana3_1332 | 0.88 | -0.8 | |
1,546,548 | + | +1.0 | |||
1,546,556 | - | -0.1 | |||
1,546,680 | + | +1.1 | |||
1,546,734 | - | Shewana3_1333 | 0.16 | +0.7 | |
1,546,798 | - | Shewana3_1333 | 0.24 | -0.2 | |
1,546,889 | - | Shewana3_1333 | 0.35 | -0.1 | |
1,546,916 | + | Shewana3_1333 | 0.39 | +1.6 | |
1,547,038 | - | Shewana3_1333 | 0.54 | -1.2 | |
1,547,053 | + | Shewana3_1333 | 0.56 | +1.8 | |
1,547,060 | + | Shewana3_1333 | 0.56 | +1.3 | |
1,547,068 | - | Shewana3_1333 | 0.57 | -0.6 | |
1,547,138 | + | Shewana3_1333 | 0.66 | +1.9 | |
1,547,273 | - | Shewana3_1333 | 0.83 | +0.2 |
Or see this region's nucleotide sequence