Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1215 and Shewana3_1216 are separated by 531 nucleotides Shewana3_1216 and Shewana3_1217 are separated by 211 nucleotides Shewana3_1217 and Shewana3_1218 are separated by 127 nucleotides
Shewana3_1215: Shewana3_1215 - hypothetical protein (RefSeq), at 1,420,034 to 1,420,816
_1215
Shewana3_1216: Shewana3_1216 - acetyltransferase (RefSeq), at 1,421,348 to 1,421,806
_1216
Shewana3_1217: Shewana3_1217 - hypothetical protein (RefSeq), at 1,422,018 to 1,422,227
_1217
Shewana3_1218: Shewana3_1218 - NrfJ-related protein (RefSeq), at 1,422,355 to 1,422,657
_1218
Position (kb)
1421
1422 Strain fitness (log2 ratio)
-2
-1
0
1 at 1420.348 kb on + strand, within Shewana3_1215 at 1420.411 kb on + strand, within Shewana3_1215 at 1420.585 kb on + strand, within Shewana3_1215 at 1420.593 kb on - strand, within Shewana3_1215 at 1420.648 kb on + strand, within Shewana3_1215 at 1420.832 kb on + strand at 1420.861 kb on - strand at 1421.136 kb on + strand at 1421.243 kb on + strand at 1421.399 kb on + strand, within Shewana3_1216 at 1421.487 kb on - strand, within Shewana3_1216 at 1421.624 kb on + strand, within Shewana3_1216 at 1421.656 kb on + strand, within Shewana3_1216 at 1421.664 kb on + strand, within Shewana3_1216 at 1421.825 kb on + strand at 1421.825 kb on + strand at 1421.837 kb on + strand at 1421.837 kb on + strand at 1421.845 kb on - strand at 1422.104 kb on + strand, within Shewana3_1217 at 1422.188 kb on - strand, within Shewana3_1217 at 1422.201 kb on - strand, within Shewana3_1217 at 1422.226 kb on - strand at 1422.472 kb on + strand, within Shewana3_1218
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,420,348 + Shewana3_1215 0.40 -0.9 1,420,411 + Shewana3_1215 0.48 -1.8 1,420,585 + Shewana3_1215 0.70 -0.9 1,420,593 - Shewana3_1215 0.71 +0.1 1,420,648 + Shewana3_1215 0.78 -2.0 1,420,832 + -2.5 1,420,861 - +0.2 1,421,136 + -2.2 1,421,243 + -0.1 1,421,399 + Shewana3_1216 0.11 +0.6 1,421,487 - Shewana3_1216 0.30 -2.2 1,421,624 + Shewana3_1216 0.60 -0.4 1,421,656 + Shewana3_1216 0.67 +0.2 1,421,664 + Shewana3_1216 0.69 +1.3 1,421,825 + -0.0 1,421,825 + -0.3 1,421,837 + -1.7 1,421,837 + -1.7 1,421,845 - +1.1 1,422,104 + Shewana3_1217 0.41 -0.7 1,422,188 - Shewana3_1217 0.81 -1.4 1,422,201 - Shewana3_1217 0.87 -1.1 1,422,226 - -1.5 1,422,472 + Shewana3_1218 0.39 +0.7
Or see this region's nucleotide sequence