Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1182
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
1,388,980 | + | Shewana3_1181 | 0.39 | -0.2 | |
1,389,147 | - | Shewana3_1181 | 0.54 | -0.3 | |
1,389,276 | + | Shewana3_1181 | 0.66 | -0.4 | |
1,389,281 | + | Shewana3_1181 | 0.66 | -0.6 | |
1,389,317 | + | Shewana3_1181 | 0.69 | -2.1 | |
1,389,382 | + | Shewana3_1181 | 0.75 | -3.0 | |
1,389,473 | - | Shewana3_1181 | 0.83 | -2.8 | |
1,389,960 | + | trmB | Shewana3_1182 | 0.17 | +0.6 |
1,390,008 | + | trmB | Shewana3_1182 | 0.24 | +1.1 |
1,391,340 | + | Shewana3_1184 | 0.45 | +0.1 | |
1,391,348 | - | Shewana3_1184 | 0.46 | -0.8 | |
1,391,401 | + | Shewana3_1184 | 0.52 | -0.9 | |
1,391,409 | + | Shewana3_1184 | 0.53 | -0.6 | |
1,391,482 | - | Shewana3_1184 | 0.61 | +0.6 | |
1,391,547 | + | Shewana3_1184 | 0.68 | -0.2 |
Or see this region's nucleotide sequence