Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1144 and Shewana3_1145 are separated by 106 nucleotides Shewana3_1145 and Shewana3_1146 are separated by 129 nucleotides Shewana3_1146 and Shewana3_1147 are separated by 99 nucleotides
Shewana3_1144: Shewana3_1144 - peptidase S41 (RefSeq), at 1,349,390 to 1,352,671
_1144
Shewana3_1145: Shewana3_1145 - hypothetical protein (RefSeq), at 1,352,778 to 1,353,200
_1145
Shewana3_1146: Shewana3_1146 - OsmC family protein (RefSeq), at 1,353,330 to 1,353,767
_1146
Shewana3_1147: Shewana3_1147 - hypothetical protein (RefSeq), at 1,353,867 to 1,354,217
_1147
Position (kb)
1352
1353
1354 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1351.790 kb on + strand, within Shewana3_1144 at 1351.790 kb on + strand, within Shewana3_1144 at 1351.862 kb on + strand, within Shewana3_1144 at 1352.052 kb on - strand, within Shewana3_1144 at 1352.052 kb on - strand, within Shewana3_1144 at 1352.420 kb on + strand at 1352.493 kb on + strand at 1352.521 kb on - strand at 1352.700 kb on + strand at 1352.835 kb on - strand, within Shewana3_1145 at 1352.835 kb on - strand, within Shewana3_1145 at 1352.869 kb on + strand, within Shewana3_1145 at 1352.941 kb on + strand, within Shewana3_1145 at 1352.983 kb on + strand, within Shewana3_1145 at 1353.509 kb on + strand, within Shewana3_1146 at 1353.581 kb on - strand, within Shewana3_1146 at 1353.797 kb on - strand at 1353.841 kb on + strand at 1353.892 kb on + strand at 1353.897 kb on + strand at 1354.022 kb on - strand, within Shewana3_1147 at 1354.165 kb on - strand, within Shewana3_1147
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,351,790 + Shewana3_1144 0.73 -0.2 1,351,790 + Shewana3_1144 0.73 +0.7 1,351,862 + Shewana3_1144 0.75 -0.3 1,352,052 - Shewana3_1144 0.81 -1.0 1,352,052 - Shewana3_1144 0.81 +0.4 1,352,420 + +0.4 1,352,493 + +0.5 1,352,521 - +2.1 1,352,700 + -0.9 1,352,835 - Shewana3_1145 0.13 -1.3 1,352,835 - Shewana3_1145 0.13 -0.3 1,352,869 + Shewana3_1145 0.22 -3.1 1,352,941 + Shewana3_1145 0.39 -1.5 1,352,983 + Shewana3_1145 0.48 -0.8 1,353,509 + Shewana3_1146 0.41 -2.1 1,353,581 - Shewana3_1146 0.57 +0.2 1,353,797 - -1.7 1,353,841 + +1.1 1,353,892 + +1.1 1,353,897 + +2.1 1,354,022 - Shewana3_1147 0.44 +1.2 1,354,165 - Shewana3_1147 0.85 +0.4
Or see this region's nucleotide sequence