Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1088 and Shewana3_1089 are separated by 128 nucleotides Shewana3_1089 and Shewana3_1090 are separated by 112 nucleotides Shewana3_1090 and Shewana3_1091 are separated by 187 nucleotides
Shewana3_1088: Shewana3_1088 - hypothetical protein (RefSeq), at 1,281,972 to 1,282,307
_1088
Shewana3_1089: Shewana3_1089 - putative protein-disulfide isomerase (RefSeq), at 1,282,436 to 1,283,089
_1089
Shewana3_1090: Shewana3_1090 - beta-lactamase domain-containing protein (RefSeq), at 1,283,202 to 1,284,101
_1090
Shewana3_1091: Shewana3_1091 - LysR family transcriptional regulator (RefSeq), at 1,284,289 to 1,285,212
_1091
Position (kb)
1283
1284
1285 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1282.232 kb on - strand, within Shewana3_1088 at 1282.232 kb on - strand, within Shewana3_1088 at 1282.507 kb on + strand, within Shewana3_1089 at 1282.515 kb on - strand, within Shewana3_1089 at 1282.534 kb on - strand, within Shewana3_1089 at 1282.550 kb on + strand, within Shewana3_1089 at 1282.743 kb on - strand, within Shewana3_1089 at 1282.829 kb on + strand, within Shewana3_1089 at 1282.850 kb on - strand, within Shewana3_1089 at 1283.254 kb on - strand at 1283.343 kb on + strand, within Shewana3_1090 at 1283.366 kb on + strand, within Shewana3_1090 at 1283.591 kb on + strand, within Shewana3_1090 at 1283.870 kb on - strand, within Shewana3_1090 at 1283.884 kb on - strand, within Shewana3_1090 at 1284.062 kb on - strand at 1284.294 kb on - strand at 1284.506 kb on - strand, within Shewana3_1091 at 1284.731 kb on + strand, within Shewana3_1091 at 1284.904 kb on - strand, within Shewana3_1091
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,282,232 - Shewana3_1088 0.77 -0.9 1,282,232 - Shewana3_1088 0.77 +2.1 1,282,507 + Shewana3_1089 0.11 -2.9 1,282,515 - Shewana3_1089 0.12 +0.1 1,282,534 - Shewana3_1089 0.15 -0.3 1,282,550 + Shewana3_1089 0.17 -1.1 1,282,743 - Shewana3_1089 0.47 -0.9 1,282,829 + Shewana3_1089 0.60 +0.5 1,282,850 - Shewana3_1089 0.63 +0.6 1,283,254 - +0.4 1,283,343 + Shewana3_1090 0.16 -1.6 1,283,366 + Shewana3_1090 0.18 +2.1 1,283,591 + Shewana3_1090 0.43 -2.0 1,283,870 - Shewana3_1090 0.74 -2.1 1,283,884 - Shewana3_1090 0.76 -1.5 1,284,062 - -2.1 1,284,294 - +0.5 1,284,506 - Shewana3_1091 0.23 -1.8 1,284,731 + Shewana3_1091 0.48 -0.6 1,284,904 - Shewana3_1091 0.67 -0.0
Or see this region's nucleotide sequence