Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0928 and Shewana3_0929 are separated by 145 nucleotides Shewana3_0929 and Shewana3_0930 are separated by 230 nucleotides
Shewana3_0928: Shewana3_0928 - cytochrome bd ubiquinol oxidase, subunit I (RefSeq), at 1,084,202 to 1,085,542
_0928
Shewana3_0929: Shewana3_0929 - GntR family transcriptional regulator (RefSeq), at 1,085,688 to 1,087,100
_0929
Shewana3_0930: Shewana3_0930 - O-acetylhomoserine/O-acetylserine sulfhydrylase (RefSeq), at 1,087,331 to 1,088,623
_0930
Position (kb)
1085
1086
1087
1088 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1085.068 kb on - strand, within Shewana3_0928 at 1085.069 kb on + strand, within Shewana3_0928 at 1085.071 kb on + strand, within Shewana3_0928 at 1085.077 kb on - strand, within Shewana3_0928 at 1085.077 kb on - strand, within Shewana3_0928 at 1085.148 kb on - strand, within Shewana3_0928 at 1085.239 kb on + strand, within Shewana3_0928 at 1085.257 kb on - strand, within Shewana3_0928 at 1085.259 kb on - strand, within Shewana3_0928 at 1085.316 kb on + strand, within Shewana3_0928 at 1085.452 kb on + strand at 1085.625 kb on + strand at 1085.633 kb on - strand at 1085.782 kb on + strand at 1085.811 kb on - strand at 1085.824 kb on - strand at 1086.216 kb on - strand, within Shewana3_0929 at 1086.310 kb on + strand, within Shewana3_0929 at 1086.371 kb on + strand, within Shewana3_0929 at 1086.502 kb on - strand, within Shewana3_0929 at 1086.570 kb on - strand, within Shewana3_0929 at 1086.588 kb on + strand, within Shewana3_0929 at 1086.596 kb on - strand, within Shewana3_0929 at 1086.596 kb on - strand, within Shewana3_0929 at 1086.711 kb on + strand, within Shewana3_0929 at 1086.799 kb on + strand, within Shewana3_0929 at 1086.800 kb on - strand, within Shewana3_0929 at 1086.805 kb on - strand, within Shewana3_0929 at 1086.964 kb on - strand at 1087.078 kb on + strand at 1087.086 kb on - strand at 1087.218 kb on + strand at 1087.425 kb on - strand at 1087.697 kb on + strand, within Shewana3_0930 at 1087.780 kb on + strand, within Shewana3_0930 at 1087.881 kb on + strand, within Shewana3_0930 at 1087.907 kb on - strand, within Shewana3_0930 at 1088.030 kb on - strand, within Shewana3_0930 at 1088.070 kb on + strand, within Shewana3_0930 at 1088.074 kb on - strand, within Shewana3_0930
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,085,068 - Shewana3_0928 0.65 -0.4 1,085,069 + Shewana3_0928 0.65 +0.1 1,085,071 + Shewana3_0928 0.65 -0.9 1,085,077 - Shewana3_0928 0.65 -0.9 1,085,077 - Shewana3_0928 0.65 -1.3 1,085,148 - Shewana3_0928 0.71 -0.5 1,085,239 + Shewana3_0928 0.77 -0.7 1,085,257 - Shewana3_0928 0.79 +0.2 1,085,259 - Shewana3_0928 0.79 +0.0 1,085,316 + Shewana3_0928 0.83 +0.2 1,085,452 + +0.1 1,085,625 + -0.6 1,085,633 - -1.0 1,085,782 + -0.9 1,085,811 - -0.8 1,085,824 - -0.3 1,086,216 - Shewana3_0929 0.37 -1.2 1,086,310 + Shewana3_0929 0.44 -0.2 1,086,371 + Shewana3_0929 0.48 -2.5 1,086,502 - Shewana3_0929 0.58 -3.0 1,086,570 - Shewana3_0929 0.62 +0.3 1,086,588 + Shewana3_0929 0.64 +0.2 1,086,596 - Shewana3_0929 0.64 -1.8 1,086,596 - Shewana3_0929 0.64 -0.5 1,086,711 + Shewana3_0929 0.72 -1.0 1,086,799 + Shewana3_0929 0.79 -0.9 1,086,800 - Shewana3_0929 0.79 -0.9 1,086,805 - Shewana3_0929 0.79 -0.0 1,086,964 - -0.3 1,087,078 + -0.5 1,087,086 - -0.3 1,087,218 + +0.8 1,087,425 - -1.8 1,087,697 + Shewana3_0930 0.28 -2.3 1,087,780 + Shewana3_0930 0.35 +0.4 1,087,881 + Shewana3_0930 0.43 +0.8 1,087,907 - Shewana3_0930 0.45 +0.2 1,088,030 - Shewana3_0930 0.54 +0.3 1,088,070 + Shewana3_0930 0.57 +0.4 1,088,074 - Shewana3_0930 0.57 -0.8
Or see this region's nucleotide sequence