Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0875 and Shewana3_0876 are separated by 307 nucleotides Shewana3_0876 and Shewana3_0877 are separated by 361 nucleotides
Shewana3_0875: Shewana3_0875 - formate dehydrogenase (RefSeq), at 1,020,558 to 1,021,202
_0875
Shewana3_0876: Shewana3_0876 - dihydropteridine reductase (RefSeq), at 1,021,510 to 1,022,163
_0876
Shewana3_0877: Shewana3_0877 - sugar-binding protein, putative (RefSeq), at 1,022,525 to 1,023,535
_0877
Position (kb)
1021
1022
1023 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1020.531 kb on + strand at 1020.532 kb on - strand at 1020.586 kb on + strand at 1020.685 kb on - strand, within Shewana3_0875 at 1020.695 kb on + strand, within Shewana3_0875 at 1020.762 kb on + strand, within Shewana3_0875 at 1021.088 kb on + strand, within Shewana3_0875 at 1021.125 kb on - strand, within Shewana3_0875 at 1021.130 kb on - strand, within Shewana3_0875 at 1021.154 kb on - strand at 1021.169 kb on + strand at 1021.169 kb on + strand at 1021.311 kb on - strand at 1021.313 kb on + strand at 1021.333 kb on - strand at 1021.602 kb on + strand, within Shewana3_0876 at 1021.625 kb on - strand, within Shewana3_0876 at 1021.693 kb on + strand, within Shewana3_0876 at 1021.723 kb on - strand, within Shewana3_0876 at 1021.748 kb on + strand, within Shewana3_0876 at 1021.912 kb on - strand, within Shewana3_0876 at 1021.912 kb on - strand, within Shewana3_0876 at 1021.993 kb on + strand, within Shewana3_0876 at 1022.116 kb on + strand at 1022.134 kb on - strand at 1022.294 kb on + strand at 1022.349 kb on + strand at 1022.350 kb on + strand at 1022.382 kb on + strand at 1022.382 kb on + strand at 1022.429 kb on + strand at 1022.503 kb on + strand at 1022.519 kb on - strand at 1022.591 kb on + strand at 1022.682 kb on - strand, within Shewana3_0877 at 1022.708 kb on + strand, within Shewana3_0877 at 1022.893 kb on + strand, within Shewana3_0877 at 1022.893 kb on + strand, within Shewana3_0877 at 1022.942 kb on + strand, within Shewana3_0877 at 1023.110 kb on + strand, within Shewana3_0877 at 1023.128 kb on - strand, within Shewana3_0877
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,020,531 + -1.6 1,020,532 - -1.1 1,020,586 + -0.8 1,020,685 - Shewana3_0875 0.20 -1.2 1,020,695 + Shewana3_0875 0.21 -2.1 1,020,762 + Shewana3_0875 0.32 -1.6 1,021,088 + Shewana3_0875 0.82 +1.1 1,021,125 - Shewana3_0875 0.88 -2.7 1,021,130 - Shewana3_0875 0.89 -0.7 1,021,154 - -1.0 1,021,169 + -0.3 1,021,169 + -0.7 1,021,311 - -3.3 1,021,313 + -0.0 1,021,333 - -1.1 1,021,602 + Shewana3_0876 0.14 -0.6 1,021,625 - Shewana3_0876 0.18 +0.9 1,021,693 + Shewana3_0876 0.28 +0.2 1,021,723 - Shewana3_0876 0.33 +0.9 1,021,748 + Shewana3_0876 0.36 +0.9 1,021,912 - Shewana3_0876 0.61 +0.7 1,021,912 - Shewana3_0876 0.61 +0.3 1,021,993 + Shewana3_0876 0.74 -1.8 1,022,116 + -4.1 1,022,134 - -0.8 1,022,294 + +0.2 1,022,349 + -0.3 1,022,350 + -2.2 1,022,382 + -0.3 1,022,382 + -0.9 1,022,429 + -0.7 1,022,503 + -0.4 1,022,519 - -0.3 1,022,591 + -0.5 1,022,682 - Shewana3_0877 0.16 +1.0 1,022,708 + Shewana3_0877 0.18 -0.4 1,022,893 + Shewana3_0877 0.36 -0.3 1,022,893 + Shewana3_0877 0.36 -1.5 1,022,942 + Shewana3_0877 0.41 -1.5 1,023,110 + Shewana3_0877 0.58 +0.8 1,023,128 - Shewana3_0877 0.60 -1.9
Or see this region's nucleotide sequence