Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0857 and Shewana3_0858 are separated by 676 nucleotides Shewana3_0858 and Shewana3_0859 are separated by 367 nucleotides
Shewana3_0857: Shewana3_0857 - phosphoadenosine phosphosulfate reductase (RefSeq), at 996,944 to 997,741
_0857
Shewana3_0858: Shewana3_0858 - monofunctional biosynthetic peptidoglycan transglycosylase (RefSeq), at 998,418 to 999,203
_0858
Shewana3_0859: Shewana3_0859 - hypothetical protein (RefSeq), at 999,571 to 1,001,307
_0859
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 997.571 kb on + strand, within Shewana3_0857 at 998.035 kb on + strand at 998.035 kb on + strand at 998.176 kb on + strand at 998.219 kb on - strand at 998.239 kb on - strand at 998.259 kb on - strand at 998.334 kb on + strand at 998.690 kb on + strand, within Shewana3_0858 at 998.762 kb on - strand, within Shewana3_0858 at 998.818 kb on - strand, within Shewana3_0858 at 998.827 kb on + strand, within Shewana3_0858 at 998.883 kb on - strand, within Shewana3_0858 at 998.883 kb on - strand, within Shewana3_0858 at 998.924 kb on + strand, within Shewana3_0858 at 998.944 kb on + strand, within Shewana3_0858 at 999.072 kb on + strand, within Shewana3_0858 at 999.077 kb on + strand, within Shewana3_0858 at 999.083 kb on + strand at 999.107 kb on + strand, within Shewana3_0858 at 999.107 kb on + strand, within Shewana3_0858 at 999.118 kb on + strand, within Shewana3_0858 at 999.121 kb on - strand, within Shewana3_0858 at 999.121 kb on - strand, within Shewana3_0858 at 999.126 kb on - strand at 999.126 kb on - strand at 999.143 kb on - strand at 999.163 kb on + strand at 999.175 kb on + strand at 999.346 kb on - strand at 999.395 kb on - strand at 999.417 kb on + strand at 999.462 kb on + strand at 999.462 kb on + strand at 999.462 kb on + strand at 999.470 kb on - strand at 999.470 kb on - strand at 999.597 kb on + strand at 999.641 kb on + strand at 999.649 kb on - strand at 999.722 kb on - strand at 999.849 kb on + strand, within Shewana3_0859 at 999.849 kb on + strand, within Shewana3_0859 at 999.849 kb on + strand, within Shewana3_0859 at 999.849 kb on + strand, within Shewana3_0859 at 999.849 kb on + strand, within Shewana3_0859 at 999.849 kb on + strand, within Shewana3_0859 at 999.849 kb on + strand, within Shewana3_0859 at 999.849 kb on + strand, within Shewana3_0859 at 999.849 kb on + strand, within Shewana3_0859 at 999.857 kb on - strand, within Shewana3_0859 at 999.857 kb on - strand, within Shewana3_0859 at 999.857 kb on - strand, within Shewana3_0859 at 999.882 kb on + strand, within Shewana3_0859 at 999.891 kb on - strand, within Shewana3_0859 at 1000.127 kb on + strand, within Shewana3_0859
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 997,571 + Shewana3_0857 0.79 +0.8 998,035 + +0.4 998,035 + +0.3 998,176 + +0.2 998,219 - -1.3 998,239 - +0.6 998,259 - -0.4 998,334 + +0.1 998,690 + Shewana3_0858 0.35 +0.0 998,762 - Shewana3_0858 0.44 -1.6 998,818 - Shewana3_0858 0.51 -2.0 998,827 + Shewana3_0858 0.52 -2.4 998,883 - Shewana3_0858 0.59 -2.7 998,883 - Shewana3_0858 0.59 -0.8 998,924 + Shewana3_0858 0.64 +0.1 998,944 + Shewana3_0858 0.67 -0.6 999,072 + Shewana3_0858 0.83 -2.9 999,077 + Shewana3_0858 0.84 -0.8 999,083 + +0.7 999,107 + Shewana3_0858 0.88 -1.2 999,107 + Shewana3_0858 0.88 -0.3 999,118 + Shewana3_0858 0.89 -3.1 999,121 - Shewana3_0858 0.89 +0.1 999,121 - Shewana3_0858 0.89 +0.5 999,126 - +1.4 999,126 - +0.1 999,143 - -0.5 999,163 + -0.0 999,175 + -0.7 999,346 - -0.3 999,395 - -0.2 999,417 + +0.2 999,462 + -0.1 999,462 + -0.7 999,462 + -0.5 999,470 - -0.3 999,470 - +0.0 999,597 + -0.8 999,641 + -1.1 999,649 - +0.1 999,722 - -0.0 999,849 + Shewana3_0859 0.16 -0.2 999,849 + Shewana3_0859 0.16 +0.3 999,849 + Shewana3_0859 0.16 +0.2 999,849 + Shewana3_0859 0.16 -0.4 999,849 + Shewana3_0859 0.16 -1.5 999,849 + Shewana3_0859 0.16 +0.4 999,849 + Shewana3_0859 0.16 +2.0 999,849 + Shewana3_0859 0.16 -0.8 999,849 + Shewana3_0859 0.16 +0.4 999,857 - Shewana3_0859 0.16 -0.3 999,857 - Shewana3_0859 0.16 -1.9 999,857 - Shewana3_0859 0.16 +1.0 999,882 + Shewana3_0859 0.18 -0.6 999,891 - Shewana3_0859 0.18 -1.8 1,000,127 + Shewana3_0859 0.32 -1.0
Or see this region's nucleotide sequence