Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0809 and Shewana3_0810 are separated by 180 nucleotides Shewana3_0810 and Shewana3_0811 are separated by 405 nucleotides
Shewana3_0809: Shewana3_0809 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 933,343 to 935,043
_0809
Shewana3_0810: Shewana3_0810 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 935,224 to 936,960
_0810
Shewana3_0811: Shewana3_0811 - hypothetical protein (RefSeq), at 937,366 to 938,412
_0811
Position (kb)
935
936
937 Strain fitness (log2 ratio)
-2
-1
0
1 at 934.245 kb on + strand, within Shewana3_0809 at 934.298 kb on + strand, within Shewana3_0809 at 934.408 kb on + strand, within Shewana3_0809 at 934.688 kb on + strand, within Shewana3_0809 at 934.963 kb on + strand at 935.188 kb on - strand at 935.323 kb on + strand at 935.340 kb on + strand at 935.587 kb on + strand, within Shewana3_0810 at 935.630 kb on - strand, within Shewana3_0810 at 935.886 kb on + strand, within Shewana3_0810 at 935.891 kb on + strand, within Shewana3_0810 at 935.891 kb on + strand, within Shewana3_0810 at 935.985 kb on - strand, within Shewana3_0810 at 936.176 kb on - strand, within Shewana3_0810 at 936.176 kb on - strand, within Shewana3_0810 at 936.290 kb on + strand, within Shewana3_0810 at 936.546 kb on + strand, within Shewana3_0810 at 936.554 kb on - strand, within Shewana3_0810 at 936.593 kb on - strand, within Shewana3_0810 at 936.721 kb on + strand, within Shewana3_0810 at 936.792 kb on + strand at 936.892 kb on - strand at 936.903 kb on - strand at 936.910 kb on + strand at 936.935 kb on + strand at 936.993 kb on - strand at 937.330 kb on - strand at 937.348 kb on + strand at 937.378 kb on - strand at 937.558 kb on - strand, within Shewana3_0811 at 937.666 kb on + strand, within Shewana3_0811 at 937.692 kb on - strand, within Shewana3_0811 at 937.703 kb on - strand, within Shewana3_0811 at 937.752 kb on + strand, within Shewana3_0811 at 937.756 kb on - strand, within Shewana3_0811 at 937.911 kb on + strand, within Shewana3_0811
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 934,245 + Shewana3_0809 0.53 +0.3 934,298 + Shewana3_0809 0.56 +0.5 934,408 + Shewana3_0809 0.63 +0.7 934,688 + Shewana3_0809 0.79 -0.6 934,963 + +0.6 935,188 - +0.9 935,323 + -0.9 935,340 + -1.7 935,587 + Shewana3_0810 0.21 -2.7 935,630 - Shewana3_0810 0.23 +0.4 935,886 + Shewana3_0810 0.38 -0.8 935,891 + Shewana3_0810 0.38 -2.4 935,891 + Shewana3_0810 0.38 -0.3 935,985 - Shewana3_0810 0.44 -0.1 936,176 - Shewana3_0810 0.55 -1.4 936,176 - Shewana3_0810 0.55 -1.3 936,290 + Shewana3_0810 0.61 -1.7 936,546 + Shewana3_0810 0.76 -0.8 936,554 - Shewana3_0810 0.77 -1.0 936,593 - Shewana3_0810 0.79 -1.6 936,721 + Shewana3_0810 0.86 -0.4 936,792 + -0.2 936,892 - -1.4 936,903 - -0.1 936,910 + -0.5 936,935 + -0.8 936,993 - -0.0 937,330 - -1.6 937,348 + -0.8 937,378 - +0.4 937,558 - Shewana3_0811 0.18 -1.0 937,666 + Shewana3_0811 0.29 +0.2 937,692 - Shewana3_0811 0.31 -0.5 937,703 - Shewana3_0811 0.32 -0.3 937,752 + Shewana3_0811 0.37 +0.8 937,756 - Shewana3_0811 0.37 -1.3 937,911 + Shewana3_0811 0.52 +1.1
Or see this region's nucleotide sequence