Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0745

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0743 and Shewana3_0744 are separated by 202 nucleotidesShewana3_0744 and Shewana3_0745 are separated by 16 nucleotidesShewana3_0745 and Shewana3_0746 are separated by 157 nucleotidesShewana3_0746 and Shewana3_0747 are separated by 3 nucleotides Shewana3_0743: Shewana3_0743 - molybdenum ABC transporter, periplasmic molybdate-binding protein (RefSeq), at 862,495 to 863,280 _0743 Shewana3_0744: Shewana3_0744 - ModE family transcriptional regulator (RefSeq), at 863,483 to 864,262 _0744 Shewana3_0745: Shewana3_0745 - putative iron-sulfur cluster binding protein (RefSeq), at 864,279 to 865,460 _0745 Shewana3_0746: Shewana3_0746 - extracellular solute-binding protein (RefSeq), at 865,618 to 866,445 _0746 Shewana3_0747: Shewana3_0747 - diguanylate cyclase (RefSeq), at 866,449 to 868,389 _0747 Position (kb) 864 865 866Strain fitness (log2 ratio) -2 -1 0 1at 863.467 kb on - strandat 863.737 kb on + strand, within Shewana3_0744at 863.923 kb on - strand, within Shewana3_0744at 863.924 kb on - strand, within Shewana3_0744at 864.047 kb on + strand, within Shewana3_0744at 864.110 kb on - strand, within Shewana3_0744at 864.206 kb on - strandat 864.471 kb on + strand, within Shewana3_0745at 864.477 kb on + strand, within Shewana3_0745at 864.479 kb on - strand, within Shewana3_0745at 864.786 kb on - strand, within Shewana3_0745at 864.820 kb on - strand, within Shewana3_0745at 864.951 kb on + strand, within Shewana3_0745at 865.149 kb on + strand, within Shewana3_0745at 865.157 kb on - strand, within Shewana3_0745at 865.157 kb on - strand, within Shewana3_0745at 865.392 kb on - strandat 865.510 kb on - strandat 865.530 kb on - strandat 865.629 kb on + strandat 865.655 kb on - strandat 865.672 kb on + strandat 865.672 kb on + strandat 865.672 kb on + strandat 865.763 kb on - strand, within Shewana3_0746at 865.780 kb on - strand, within Shewana3_0746at 865.785 kb on - strand, within Shewana3_0746at 865.813 kb on - strand, within Shewana3_0746at 865.878 kb on + strand, within Shewana3_0746at 865.886 kb on - strand, within Shewana3_0746at 865.919 kb on - strand, within Shewana3_0746at 866.325 kb on - strand, within Shewana3_0746

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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863,467 - -0.7
863,737 + Shewana3_0744 0.33 -0.2
863,923 - Shewana3_0744 0.56 -1.1
863,924 - Shewana3_0744 0.57 -0.2
864,047 + Shewana3_0744 0.72 +0.0
864,110 - Shewana3_0744 0.80 -2.0
864,206 - -0.0
864,471 + Shewana3_0745 0.16 -0.7
864,477 + Shewana3_0745 0.17 -0.2
864,479 - Shewana3_0745 0.17 -1.0
864,786 - Shewana3_0745 0.43 -0.3
864,820 - Shewana3_0745 0.46 -1.0
864,951 + Shewana3_0745 0.57 -0.3
865,149 + Shewana3_0745 0.74 -1.6
865,157 - Shewana3_0745 0.74 -2.7
865,157 - Shewana3_0745 0.74 -2.5
865,392 - -1.4
865,510 - -1.9
865,530 - +0.4
865,629 + +0.6
865,655 - +0.4
865,672 + -1.3
865,672 + -0.7
865,672 + -0.0
865,763 - Shewana3_0746 0.18 -2.4
865,780 - Shewana3_0746 0.20 -1.5
865,785 - Shewana3_0746 0.20 +0.2
865,813 - Shewana3_0746 0.24 +1.3
865,878 + Shewana3_0746 0.31 -1.9
865,886 - Shewana3_0746 0.32 +0.4
865,919 - Shewana3_0746 0.36 -0.4
866,325 - Shewana3_0746 0.85 -0.4

Or see this region's nucleotide sequence