Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0697 and Shewana3_0698 are separated by 0 nucleotides Shewana3_0698 and Shewana3_0699 are separated by 69 nucleotides
Shewana3_0697: Shewana3_0697 - RNAse R (RefSeq), at 812,472 to 814,901
_0697
Shewana3_0698: Shewana3_0698 - 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq), at 814,902 to 815,642
_0698
Shewana3_0699: Shewana3_0699 - major facilitator transporter (RefSeq), at 815,712 to 817,136
_0699
Position (kb) 814
815
816 Strain fitness (log2 ratio) -2
-1
0
1 at 813.947 kb on - strand, within Shewana3_0697 at 814.539 kb on + strand, within Shewana3_0697 at 814.560 kb on + strand, within Shewana3_0697 at 814.678 kb on - strand at 814.814 kb on + strand at 814.960 kb on + strand at 814.989 kb on + strand, within Shewana3_0698 at 815.034 kb on + strand, within Shewana3_0698 at 815.041 kb on - strand, within Shewana3_0698 at 815.076 kb on + strand, within Shewana3_0698 at 815.098 kb on + strand, within Shewana3_0698 at 815.508 kb on + strand, within Shewana3_0698 at 815.508 kb on + strand, within Shewana3_0698 at 815.744 kb on + strand at 815.982 kb on - strand, within Shewana3_0699 at 816.075 kb on - strand, within Shewana3_0699 at 816.109 kb on - strand, within Shewana3_0699 at 816.110 kb on - strand, within Shewana3_0699 at 816.527 kb on + strand, within Shewana3_0699 at 816.617 kb on + strand, within Shewana3_0699
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 813,947 - Shewana3_0697 0.61 -2.1 814,539 + Shewana3_0697 0.85 +0.0 814,560 + Shewana3_0697 0.86 +0.4 814,678 - -2.1 814,814 + -0.4 814,960 + -0.5 814,989 + Shewana3_0698 0.12 +0.8 815,034 + Shewana3_0698 0.18 +0.5 815,041 - Shewana3_0698 0.19 -0.8 815,076 + Shewana3_0698 0.23 +0.4 815,098 + Shewana3_0698 0.26 -0.8 815,508 + Shewana3_0698 0.82 +0.9 815,508 + Shewana3_0698 0.82 +0.9 815,744 + -0.9 815,982 - Shewana3_0699 0.19 -0.4 816,075 - Shewana3_0699 0.25 +0.5 816,109 - Shewana3_0699 0.28 +0.4 816,110 - Shewana3_0699 0.28 +0.5 816,527 + Shewana3_0699 0.57 -0.5 816,617 + Shewana3_0699 0.64 -0.1
Or see this region's nucleotide sequence