Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0659 and Shewana3_0660 are separated by 205 nucleotides Shewana3_0660 and Shewana3_0661 are separated by 34 nucleotides Shewana3_0661 and Shewana3_0662 are separated by 159 nucleotides
Shewana3_0659: Shewana3_0659 - diguanylate cyclase/phosphodiesterase with GAF sensor (RefSeq), at 779,893 to 781,833
_0659
Shewana3_0660: Shewana3_0660 - hypothetical protein (RefSeq), at 782,039 to 782,809
_0660
Shewana3_0661: Shewana3_0661 - hypothetical protein (RefSeq), at 782,844 to 783,428
_0661
Shewana3_0662: Shewana3_0662 - hypothetical protein (RefSeq), at 783,588 to 783,935
_0662
Position (kb) 782
783 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 781.134 kb on - strand, within Shewana3_0659 at 781.203 kb on + strand, within Shewana3_0659 at 781.259 kb on - strand, within Shewana3_0659 at 781.398 kb on + strand, within Shewana3_0659 at 781.406 kb on - strand, within Shewana3_0659 at 781.524 kb on - strand, within Shewana3_0659 at 781.539 kb on + strand, within Shewana3_0659 at 781.578 kb on - strand, within Shewana3_0659 at 781.705 kb on + strand at 781.718 kb on - strand at 781.870 kb on + strand at 781.884 kb on - strand at 782.053 kb on - strand at 782.132 kb on + strand, within Shewana3_0660 at 782.187 kb on + strand, within Shewana3_0660 at 782.202 kb on - strand, within Shewana3_0660 at 782.284 kb on - strand, within Shewana3_0660 at 782.294 kb on + strand, within Shewana3_0660 at 782.294 kb on + strand, within Shewana3_0660 at 782.294 kb on + strand, within Shewana3_0660 at 782.368 kb on - strand, within Shewana3_0660 at 782.368 kb on - strand, within Shewana3_0660 at 782.368 kb on - strand, within Shewana3_0660 at 782.369 kb on + strand, within Shewana3_0660 at 782.397 kb on + strand, within Shewana3_0660 at 782.582 kb on + strand, within Shewana3_0660 at 782.623 kb on + strand, within Shewana3_0660 at 782.633 kb on + strand, within Shewana3_0660 at 782.752 kb on + strand at 782.784 kb on + strand at 782.836 kb on - strand at 782.865 kb on + strand at 782.891 kb on - strand at 783.109 kb on + strand, within Shewana3_0661 at 783.162 kb on + strand, within Shewana3_0661 at 783.340 kb on - strand, within Shewana3_0661 at 783.352 kb on - strand, within Shewana3_0661 at 783.385 kb on - strand at 783.534 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 781,134 - Shewana3_0659 0.64 -2.5 781,203 + Shewana3_0659 0.67 -0.8 781,259 - Shewana3_0659 0.70 -1.1 781,398 + Shewana3_0659 0.78 -2.0 781,406 - Shewana3_0659 0.78 +0.3 781,524 - Shewana3_0659 0.84 -4.1 781,539 + Shewana3_0659 0.85 -0.4 781,578 - Shewana3_0659 0.87 -0.5 781,705 + -0.1 781,718 - -0.8 781,870 + -2.1 781,884 - -1.6 782,053 - -2.7 782,132 + Shewana3_0660 0.12 +0.0 782,187 + Shewana3_0660 0.19 -0.5 782,202 - Shewana3_0660 0.21 -1.5 782,284 - Shewana3_0660 0.32 -0.1 782,294 + Shewana3_0660 0.33 -2.6 782,294 + Shewana3_0660 0.33 +0.1 782,294 + Shewana3_0660 0.33 -0.3 782,368 - Shewana3_0660 0.43 -0.1 782,368 - Shewana3_0660 0.43 +0.6 782,368 - Shewana3_0660 0.43 -1.4 782,369 + Shewana3_0660 0.43 -0.1 782,397 + Shewana3_0660 0.46 +0.1 782,582 + Shewana3_0660 0.70 +0.2 782,623 + Shewana3_0660 0.76 +0.7 782,633 + Shewana3_0660 0.77 +0.1 782,752 + +0.1 782,784 + +0.6 782,836 - -0.7 782,865 + -0.3 782,891 - +0.2 783,109 + Shewana3_0661 0.45 -2.6 783,162 + Shewana3_0661 0.54 -0.5 783,340 - Shewana3_0661 0.85 +0.4 783,352 - Shewana3_0661 0.87 -0.7 783,385 - -0.0 783,534 + -0.0
Or see this region's nucleotide sequence