Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0648 and Shewana3_0649 are separated by 296 nucleotides Shewana3_0649 and Shewana3_0650 are separated by 352 nucleotides
Shewana3_0648: Shewana3_0648 - fructose-1,6-bisphosphatase (RefSeq), at 765,288 to 766,280
_0648
Shewana3_0649: Shewana3_0649 - dipeptidyl-peptidase IV (RefSeq), at 766,577 to 768,868
_0649
Shewana3_0650: Shewana3_0650 - two-component response regulator (RefSeq), at 769,221 to 769,937
_0650
Position (kb) 766
767
768
769 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 765.579 kb on - strand, within Shewana3_0648 at 765.628 kb on - strand, within Shewana3_0648 at 765.802 kb on - strand, within Shewana3_0648 at 765.897 kb on - strand, within Shewana3_0648 at 765.979 kb on - strand, within Shewana3_0648 at 766.193 kb on - strand at 766.265 kb on + strand at 766.273 kb on - strand at 766.412 kb on + strand at 766.412 kb on + strand at 766.412 kb on + strand at 766.450 kb on + strand at 766.552 kb on - strand at 766.712 kb on - strand at 766.712 kb on - strand at 766.880 kb on - strand, within Shewana3_0649 at 767.003 kb on + strand, within Shewana3_0649 at 767.016 kb on - strand, within Shewana3_0649 at 767.372 kb on - strand, within Shewana3_0649 at 767.695 kb on - strand, within Shewana3_0649 at 767.871 kb on + strand, within Shewana3_0649 at 767.872 kb on - strand, within Shewana3_0649 at 768.034 kb on - strand, within Shewana3_0649 at 768.034 kb on - strand, within Shewana3_0649 at 768.041 kb on + strand, within Shewana3_0649 at 768.044 kb on - strand, within Shewana3_0649 at 768.060 kb on - strand, within Shewana3_0649 at 768.081 kb on + strand, within Shewana3_0649 at 768.104 kb on + strand, within Shewana3_0649 at 768.154 kb on + strand, within Shewana3_0649 at 768.206 kb on + strand, within Shewana3_0649 at 768.261 kb on + strand, within Shewana3_0649 at 768.274 kb on - strand, within Shewana3_0649 at 768.387 kb on + strand, within Shewana3_0649 at 768.683 kb on + strand at 768.729 kb on - strand at 768.829 kb on + strand at 768.883 kb on + strand at 768.920 kb on + strand at 768.922 kb on + strand at 768.945 kb on - strand at 768.966 kb on + strand at 768.973 kb on + strand at 769.016 kb on - strand at 769.084 kb on + strand at 769.258 kb on - strand at 769.433 kb on - strand, within Shewana3_0650 at 769.433 kb on - strand, within Shewana3_0650 at 769.487 kb on - strand, within Shewana3_0650 at 769.538 kb on - strand, within Shewana3_0650 at 769.580 kb on - strand, within Shewana3_0650 at 769.589 kb on - strand, within Shewana3_0650 at 769.821 kb on - strand, within Shewana3_0650 at 769.821 kb on - strand, within Shewana3_0650 at 769.821 kb on - strand, within Shewana3_0650 at 769.842 kb on - strand, within Shewana3_0650 at 769.842 kb on - strand, within Shewana3_0650
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 765,579 - Shewana3_0648 0.29 -1.3 765,628 - Shewana3_0648 0.34 -1.6 765,802 - Shewana3_0648 0.52 -0.9 765,897 - Shewana3_0648 0.61 -1.6 765,979 - Shewana3_0648 0.70 -2.0 766,193 - -0.8 766,265 + -3.1 766,273 - -1.1 766,412 + -0.4 766,412 + -0.3 766,412 + -0.4 766,450 + -1.4 766,552 - -2.3 766,712 - -0.5 766,712 - -1.3 766,880 - Shewana3_0649 0.13 +0.1 767,003 + Shewana3_0649 0.19 +0.4 767,016 - Shewana3_0649 0.19 -0.3 767,372 - Shewana3_0649 0.35 -1.4 767,695 - Shewana3_0649 0.49 -1.2 767,871 + Shewana3_0649 0.56 +0.0 767,872 - Shewana3_0649 0.57 +0.2 768,034 - Shewana3_0649 0.64 -1.1 768,034 - Shewana3_0649 0.64 +0.1 768,041 + Shewana3_0649 0.64 -0.1 768,044 - Shewana3_0649 0.64 -2.3 768,060 - Shewana3_0649 0.65 -0.3 768,081 + Shewana3_0649 0.66 -0.7 768,104 + Shewana3_0649 0.67 -0.7 768,154 + Shewana3_0649 0.69 +0.1 768,206 + Shewana3_0649 0.71 +0.1 768,261 + Shewana3_0649 0.73 +0.2 768,274 - Shewana3_0649 0.74 -0.3 768,387 + Shewana3_0649 0.79 +0.0 768,683 + +0.4 768,729 - +0.1 768,829 + -0.6 768,883 + +0.6 768,920 + +0.1 768,922 + -0.8 768,945 - -0.6 768,966 + -0.2 768,973 + +1.0 769,016 - +0.7 769,084 + -0.7 769,258 - +2.1 769,433 - Shewana3_0650 0.30 +1.7 769,433 - Shewana3_0650 0.30 +2.9 769,487 - Shewana3_0650 0.37 +2.0 769,538 - Shewana3_0650 0.44 +2.2 769,580 - Shewana3_0650 0.50 +3.1 769,589 - Shewana3_0650 0.51 +2.6 769,821 - Shewana3_0650 0.84 +2.3 769,821 - Shewana3_0650 0.84 +3.0 769,821 - Shewana3_0650 0.84 +3.9 769,842 - Shewana3_0650 0.87 +1.2 769,842 - Shewana3_0650 0.87 +1.7
Or see this region's nucleotide sequence