Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0647 and Shewana3_0648 are separated by 607 nucleotides Shewana3_0648 and Shewana3_0649 are separated by 296 nucleotides
Shewana3_0647: Shewana3_0647 - NERD domain-containing protein (RefSeq), at 763,691 to 764,680
_0647
Shewana3_0648: Shewana3_0648 - fructose-1,6-bisphosphatase (RefSeq), at 765,288 to 766,280
_0648
Shewana3_0649: Shewana3_0649 - dipeptidyl-peptidase IV (RefSeq), at 766,577 to 768,868
_0649
Position (kb) 765
766
767 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 764.337 kb on - strand, within Shewana3_0647 at 764.340 kb on + strand, within Shewana3_0647 at 764.460 kb on - strand, within Shewana3_0647 at 764.534 kb on + strand, within Shewana3_0647 at 764.563 kb on + strand, within Shewana3_0647 at 764.593 kb on + strand at 764.593 kb on + strand at 764.601 kb on - strand at 764.643 kb on - strand at 764.768 kb on + strand at 764.776 kb on - strand at 764.830 kb on - strand at 764.873 kb on - strand at 764.962 kb on + strand at 765.086 kb on + strand at 765.299 kb on - strand at 765.564 kb on + strand, within Shewana3_0648 at 765.564 kb on + strand, within Shewana3_0648 at 765.571 kb on + strand, within Shewana3_0648 at 765.579 kb on - strand, within Shewana3_0648 at 765.628 kb on - strand, within Shewana3_0648 at 765.802 kb on - strand, within Shewana3_0648 at 765.897 kb on - strand, within Shewana3_0648 at 765.979 kb on - strand, within Shewana3_0648 at 766.193 kb on - strand at 766.265 kb on + strand at 766.273 kb on - strand at 766.412 kb on + strand at 766.412 kb on + strand at 766.412 kb on + strand at 766.450 kb on + strand at 766.552 kb on - strand at 766.712 kb on - strand at 766.712 kb on - strand at 766.880 kb on - strand, within Shewana3_0649 at 767.003 kb on + strand, within Shewana3_0649 at 767.016 kb on - strand, within Shewana3_0649
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 764,337 - Shewana3_0647 0.65 -1.5 764,340 + Shewana3_0647 0.66 -1.0 764,460 - Shewana3_0647 0.78 -0.7 764,534 + Shewana3_0647 0.85 +0.8 764,563 + Shewana3_0647 0.88 +1.0 764,593 + -0.2 764,593 + -0.8 764,601 - -0.0 764,643 - -1.1 764,768 + +0.5 764,776 - -0.7 764,830 - -2.9 764,873 - -0.9 764,962 + +0.3 765,086 + +0.2 765,299 - +0.6 765,564 + Shewana3_0648 0.28 -3.2 765,564 + Shewana3_0648 0.28 -2.4 765,571 + Shewana3_0648 0.28 -1.0 765,579 - Shewana3_0648 0.29 -1.3 765,628 - Shewana3_0648 0.34 -1.6 765,802 - Shewana3_0648 0.52 -0.9 765,897 - Shewana3_0648 0.61 -1.6 765,979 - Shewana3_0648 0.70 -2.0 766,193 - -0.8 766,265 + -3.1 766,273 - -1.1 766,412 + -0.4 766,412 + -0.3 766,412 + -0.4 766,450 + -1.4 766,552 - -2.3 766,712 - -0.5 766,712 - -1.3 766,880 - Shewana3_0649 0.13 +0.1 767,003 + Shewana3_0649 0.19 +0.4 767,016 - Shewana3_0649 0.19 -0.3
Or see this region's nucleotide sequence