Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0631 and Shewana3_0632 are separated by 317 nucleotides Shewana3_0632 and Shewana3_0633 are separated by 291 nucleotides
Shewana3_0631: Shewana3_0631 - hypothetical protein (RefSeq), at 741,265 to 741,966
_0631
Shewana3_0632: Shewana3_0632 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 742,284 to 743,582
_0632
Shewana3_0633: Shewana3_0633 - molydopterin dinucleotide-binding region (RefSeq), at 743,874 to 746,981
_0633
Position (kb) 742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 741.425 kb on + strand, within Shewana3_0631 at 741.425 kb on + strand, within Shewana3_0631 at 741.425 kb on + strand, within Shewana3_0631 at 741.433 kb on - strand, within Shewana3_0631 at 741.448 kb on - strand, within Shewana3_0631 at 741.701 kb on - strand, within Shewana3_0631 at 741.763 kb on + strand, within Shewana3_0631 at 741.848 kb on - strand, within Shewana3_0631 at 741.994 kb on + strand at 742.023 kb on - strand at 742.089 kb on - strand at 742.137 kb on - strand at 742.163 kb on + strand at 742.163 kb on + strand at 742.171 kb on - strand at 742.436 kb on - strand, within Shewana3_0632 at 742.518 kb on - strand, within Shewana3_0632 at 742.826 kb on + strand, within Shewana3_0632 at 742.893 kb on - strand, within Shewana3_0632 at 743.143 kb on + strand, within Shewana3_0632 at 743.151 kb on - strand, within Shewana3_0632 at 743.255 kb on + strand, within Shewana3_0632 at 743.257 kb on - strand, within Shewana3_0632 at 743.430 kb on - strand, within Shewana3_0632 at 743.484 kb on - strand at 743.636 kb on + strand at 743.678 kb on + strand at 743.678 kb on + strand at 743.678 kb on + strand at 743.678 kb on + strand at 743.984 kb on + strand at 744.071 kb on + strand at 744.071 kb on + strand at 744.219 kb on + strand, within Shewana3_0633 at 744.260 kb on - strand, within Shewana3_0633 at 744.267 kb on + strand, within Shewana3_0633 at 744.336 kb on + strand, within Shewana3_0633 at 744.344 kb on - strand, within Shewana3_0633 at 744.344 kb on - strand, within Shewana3_0633 at 744.344 kb on - strand, within Shewana3_0633 at 744.567 kb on - strand, within Shewana3_0633
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 741,425 + Shewana3_0631 0.23 -0.3 741,425 + Shewana3_0631 0.23 -0.4 741,425 + Shewana3_0631 0.23 -0.2 741,433 - Shewana3_0631 0.24 +1.9 741,448 - Shewana3_0631 0.26 -1.5 741,701 - Shewana3_0631 0.62 +0.3 741,763 + Shewana3_0631 0.71 +0.3 741,848 - Shewana3_0631 0.83 +0.3 741,994 + +0.4 742,023 - -0.5 742,089 - +0.3 742,137 - +0.5 742,163 + -2.9 742,163 + -1.6 742,171 - -0.1 742,436 - Shewana3_0632 0.12 +0.4 742,518 - Shewana3_0632 0.18 -0.2 742,826 + Shewana3_0632 0.42 -1.0 742,893 - Shewana3_0632 0.47 -1.5 743,143 + Shewana3_0632 0.66 -1.9 743,151 - Shewana3_0632 0.67 -1.2 743,255 + Shewana3_0632 0.75 +0.0 743,257 - Shewana3_0632 0.75 -0.2 743,430 - Shewana3_0632 0.88 -0.9 743,484 - -0.2 743,636 + +0.5 743,678 + +0.3 743,678 + -0.0 743,678 + -0.6 743,678 + +0.6 743,984 + -0.0 744,071 + -0.0 744,071 + +0.2 744,219 + Shewana3_0633 0.11 -0.7 744,260 - Shewana3_0633 0.12 +1.7 744,267 + Shewana3_0633 0.13 -0.9 744,336 + Shewana3_0633 0.15 +0.3 744,344 - Shewana3_0633 0.15 +0.2 744,344 - Shewana3_0633 0.15 -0.1 744,344 - Shewana3_0633 0.15 -0.3 744,567 - Shewana3_0633 0.22 -0.1
Or see this region's nucleotide sequence