Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0623 and Shewana3_0624 are separated by 77 nucleotides Shewana3_0624 and Shewana3_0625 are separated by 170 nucleotides
Shewana3_0623: Shewana3_0623 - penicillin-binding protein 1B (RefSeq), at 730,638 to 732,932
_0623
Shewana3_0624: Shewana3_0624 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 733,010 to 733,288
_0624
Shewana3_0625: Shewana3_0625 - hypothetical protein (RefSeq), at 733,459 to 733,896
_0625
Position (kb) 733
734 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 732.573 kb on + strand, within Shewana3_0623 at 732.709 kb on + strand at 732.865 kb on - strand at 732.877 kb on - strand at 733.173 kb on - strand, within Shewana3_0624 at 733.176 kb on + strand, within Shewana3_0624 at 733.219 kb on + strand, within Shewana3_0624 at 733.304 kb on - strand at 733.438 kb on - strand at 733.503 kb on + strand, within Shewana3_0625 at 733.503 kb on + strand, within Shewana3_0625 at 733.511 kb on - strand, within Shewana3_0625 at 733.511 kb on - strand, within Shewana3_0625 at 733.511 kb on - strand, within Shewana3_0625 at 733.511 kb on - strand, within Shewana3_0625 at 733.511 kb on - strand, within Shewana3_0625 at 733.816 kb on + strand, within Shewana3_0625 at 733.824 kb on - strand, within Shewana3_0625 at 733.831 kb on - strand, within Shewana3_0625 at 733.915 kb on + strand at 733.961 kb on + strand at 733.980 kb on + strand at 734.129 kb on - strand at 734.270 kb on - strand at 734.270 kb on - strand at 734.343 kb on - strand at 734.784 kb on - strand at 734.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 732,573 + Shewana3_0623 0.84 -1.5 732,709 + -0.3 732,865 - +0.5 732,877 - -0.0 733,173 - Shewana3_0624 0.58 -0.8 733,176 + Shewana3_0624 0.59 +0.2 733,219 + Shewana3_0624 0.75 -0.3 733,304 - -2.8 733,438 - +0.1 733,503 + Shewana3_0625 0.10 -1.0 733,503 + Shewana3_0625 0.10 -1.1 733,511 - Shewana3_0625 0.12 -1.2 733,511 - Shewana3_0625 0.12 -0.1 733,511 - Shewana3_0625 0.12 -0.4 733,511 - Shewana3_0625 0.12 +0.1 733,511 - Shewana3_0625 0.12 -2.2 733,816 + Shewana3_0625 0.82 -0.6 733,824 - Shewana3_0625 0.83 -1.8 733,831 - Shewana3_0625 0.85 +0.0 733,915 + -0.7 733,961 + -1.7 733,980 + -0.1 734,129 - -1.7 734,270 - +1.0 734,270 - +0.2 734,343 - +0.0 734,784 - -0.9 734,871 - +0.9
Or see this region's nucleotide sequence