Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0567

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0565 and Shewana3_0566 overlap by 17 nucleotidesShewana3_0566 and Shewana3_0567 are separated by 4 nucleotidesShewana3_0567 and Shewana3_0568 are separated by 156 nucleotidesShewana3_0568 and Shewana3_0569 are separated by 43 nucleotides Shewana3_0565: Shewana3_0565 - hypothetical protein (RefSeq), at 658,020 to 659,201 _0565 Shewana3_0566: Shewana3_0566 - periplasmic solute binding protein (RefSeq), at 659,185 to 660,093 _0566 Shewana3_0567: Shewana3_0567 - ABC-3 protein (RefSeq), at 660,098 to 660,865 _0567 Shewana3_0568: Shewana3_0568 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq), at 661,022 to 661,804 _0568 Shewana3_0569: Shewana3_0569 - hypothetical protein (RefSeq), at 661,848 to 662,255 _0569 Position (kb) 660 661Strain fitness (log2 ratio) -2 -1 0 1at 659.162 kb on + strandat 659.162 kb on - strandat 659.562 kb on - strand, within Shewana3_0566at 659.656 kb on - strand, within Shewana3_0566at 659.656 kb on - strand, within Shewana3_0566at 659.762 kb on - strand, within Shewana3_0566at 660.052 kb on + strandat 660.052 kb on + strandat 660.052 kb on + strandat 660.060 kb on - strandat 660.235 kb on - strand, within Shewana3_0567at 660.266 kb on + strand, within Shewana3_0567at 660.281 kb on - strand, within Shewana3_0567at 660.450 kb on + strand, within Shewana3_0567at 660.695 kb on + strand, within Shewana3_0567at 660.729 kb on + strand, within Shewana3_0567at 660.775 kb on - strand, within Shewana3_0567at 660.805 kb on - strandat 660.929 kb on + strandat 661.077 kb on + strandat 661.149 kb on - strand, within Shewana3_0568at 661.202 kb on + strand, within Shewana3_0568at 661.303 kb on + strand, within Shewana3_0568at 661.303 kb on + strand, within Shewana3_0568at 661.311 kb on - strand, within Shewana3_0568at 661.311 kb on - strand, within Shewana3_0568at 661.311 kb on - strand, within Shewana3_0568at 661.375 kb on + strand, within Shewana3_0568at 661.538 kb on - strand, within Shewana3_0568at 661.563 kb on + strand, within Shewana3_0568at 661.635 kb on + strand, within Shewana3_0568at 661.709 kb on + strand, within Shewana3_0568

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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659,162 + +0.7
659,162 - -1.9
659,562 - Shewana3_0566 0.41 -2.4
659,656 - Shewana3_0566 0.52 -1.0
659,656 - Shewana3_0566 0.52 -1.4
659,762 - Shewana3_0566 0.63 -0.3
660,052 + +0.1
660,052 + +0.5
660,052 + +0.5
660,060 - -2.5
660,235 - Shewana3_0567 0.18 -1.5
660,266 + Shewana3_0567 0.22 +0.3
660,281 - Shewana3_0567 0.24 -0.2
660,450 + Shewana3_0567 0.46 +0.1
660,695 + Shewana3_0567 0.78 +0.5
660,729 + Shewana3_0567 0.82 +0.9
660,775 - Shewana3_0567 0.88 -0.7
660,805 - -0.2
660,929 + -2.4
661,077 + -2.1
661,149 - Shewana3_0568 0.16 +1.0
661,202 + Shewana3_0568 0.23 -1.7
661,303 + Shewana3_0568 0.36 +0.6
661,303 + Shewana3_0568 0.36 -0.6
661,311 - Shewana3_0568 0.37 +0.1
661,311 - Shewana3_0568 0.37 -0.9
661,311 - Shewana3_0568 0.37 +0.3
661,375 + Shewana3_0568 0.45 +0.0
661,538 - Shewana3_0568 0.66 -0.3
661,563 + Shewana3_0568 0.69 -0.7
661,635 + Shewana3_0568 0.78 +0.2
661,709 + Shewana3_0568 0.88 -0.0

Or see this region's nucleotide sequence