Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0560 and Shewana3_0561 are separated by 79 nucleotides Shewana3_0561 and Shewana3_0562 are separated by 221 nucleotides Shewana3_0562 and Shewana3_0563 are separated by 80 nucleotides
Shewana3_0560: Shewana3_0560 - formate--tetrahydrofolate ligase (RefSeq), at 653,188 to 654,900
_0560
Shewana3_0561: Shewana3_0561 - MscS mechanosensitive ion channel (RefSeq), at 654,980 to 656,635
_0561
Shewana3_0562: Shewana3_0562 - hypothetical protein (RefSeq), at 656,857 to 657,186
_0562
Shewana3_0563: Shewana3_0563 - hypothetical protein (RefSeq), at 657,267 to 657,392
_0563
Position (kb) 654
655
656
657 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 654.144 kb on - strand, within Shewana3_0560 at 654.215 kb on + strand, within Shewana3_0560 at 654.215 kb on + strand, within Shewana3_0560 at 654.493 kb on - strand, within Shewana3_0560 at 654.527 kb on + strand, within Shewana3_0560 at 654.537 kb on + strand, within Shewana3_0560 at 654.590 kb on - strand, within Shewana3_0560 at 654.604 kb on + strand, within Shewana3_0560 at 654.718 kb on - strand, within Shewana3_0560 at 654.812 kb on - strand at 654.812 kb on - strand at 654.844 kb on - strand at 654.849 kb on - strand at 655.186 kb on + strand, within Shewana3_0561 at 655.204 kb on - strand, within Shewana3_0561 at 655.285 kb on - strand, within Shewana3_0561 at 655.328 kb on + strand, within Shewana3_0561 at 655.731 kb on - strand, within Shewana3_0561 at 655.759 kb on - strand, within Shewana3_0561 at 656.233 kb on - strand, within Shewana3_0561 at 656.672 kb on - strand at 656.696 kb on + strand at 656.750 kb on - strand at 656.972 kb on + strand, within Shewana3_0562 at 656.980 kb on - strand, within Shewana3_0562 at 657.033 kb on - strand, within Shewana3_0562 at 657.227 kb on - strand at 657.254 kb on + strand at 657.254 kb on + strand at 657.262 kb on - strand at 657.262 kb on - strand at 657.398 kb on - strand at 657.418 kb on - strand at 657.437 kb on + strand at 657.437 kb on + strand at 657.437 kb on + strand at 657.445 kb on - strand at 657.445 kb on - strand at 657.445 kb on - strand at 657.447 kb on + strand at 657.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 654,144 - Shewana3_0560 0.56 -0.2 654,215 + Shewana3_0560 0.60 +0.9 654,215 + Shewana3_0560 0.60 +0.8 654,493 - Shewana3_0560 0.76 -1.8 654,527 + Shewana3_0560 0.78 -0.0 654,537 + Shewana3_0560 0.79 -0.3 654,590 - Shewana3_0560 0.82 +0.0 654,604 + Shewana3_0560 0.83 +0.2 654,718 - Shewana3_0560 0.89 -0.8 654,812 - -1.4 654,812 - -0.9 654,844 - -0.3 654,849 - -2.2 655,186 + Shewana3_0561 0.12 +0.2 655,204 - Shewana3_0561 0.14 +0.7 655,285 - Shewana3_0561 0.18 +0.5 655,328 + Shewana3_0561 0.21 -0.2 655,731 - Shewana3_0561 0.45 +0.5 655,759 - Shewana3_0561 0.47 +0.4 656,233 - Shewana3_0561 0.76 -2.2 656,672 - -2.1 656,696 + -2.1 656,750 - -3.3 656,972 + Shewana3_0562 0.35 -1.3 656,980 - Shewana3_0562 0.37 -1.3 657,033 - Shewana3_0562 0.53 -0.0 657,227 - -2.0 657,254 + -2.0 657,254 + -0.9 657,262 - -1.1 657,262 - +0.3 657,398 - +0.1 657,418 - +1.2 657,437 + -0.5 657,437 + -1.2 657,437 + -1.0 657,445 - -0.0 657,445 - -1.0 657,445 - -0.3 657,447 + -1.6 657,615 - +0.1
Or see this region's nucleotide sequence