Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0537 and Shewana3_0538 are separated by 81 nucleotides Shewana3_0538 and Shewana3_0539 are separated by 67 nucleotides Shewana3_0539 and Shewana3_0540 are separated by 280 nucleotides
Shewana3_0537: Shewana3_0537 - aspartate kinase (RefSeq), at 631,159 to 632,601
_0537
Shewana3_0538: Shewana3_0538 - hypothetical protein (RefSeq), at 632,683 to 633,102
_0538
Shewana3_0539: Shewana3_0539 - hypothetical protein (RefSeq), at 633,170 to 634,525
_0539
Shewana3_0540: Shewana3_0540 - hypothetical protein (RefSeq), at 634,806 to 635,768
_0540
Position (kb) 633
634
635 Strain fitness (log2 ratio) -2
-1
0
1 at 632.196 kb on + strand, within Shewana3_0537 at 632.196 kb on + strand, within Shewana3_0537 at 632.196 kb on + strand, within Shewana3_0537 at 632.204 kb on - strand, within Shewana3_0537 at 632.320 kb on - strand, within Shewana3_0537 at 632.320 kb on - strand, within Shewana3_0537 at 632.350 kb on - strand, within Shewana3_0537 at 632.412 kb on - strand, within Shewana3_0537 at 632.672 kb on - strand at 632.674 kb on + strand at 632.780 kb on + strand, within Shewana3_0538 at 632.853 kb on + strand, within Shewana3_0538 at 632.861 kb on + strand, within Shewana3_0538 at 632.901 kb on - strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.158 kb on - strand at 633.208 kb on + strand at 633.208 kb on + strand at 633.209 kb on + strand at 633.209 kb on + strand at 633.216 kb on - strand at 633.216 kb on - strand at 633.216 kb on - strand at 633.217 kb on - strand at 633.220 kb on + strand at 633.220 kb on + strand at 633.356 kb on + strand, within Shewana3_0539 at 633.399 kb on + strand, within Shewana3_0539 at 633.405 kb on - strand, within Shewana3_0539 at 633.444 kb on - strand, within Shewana3_0539 at 633.503 kb on + strand, within Shewana3_0539 at 633.503 kb on + strand, within Shewana3_0539 at 633.543 kb on + strand, within Shewana3_0539 at 633.543 kb on + strand, within Shewana3_0539 at 633.747 kb on - strand, within Shewana3_0539 at 633.795 kb on + strand, within Shewana3_0539 at 633.846 kb on - strand, within Shewana3_0539 at 633.896 kb on - strand, within Shewana3_0539 at 633.925 kb on - strand, within Shewana3_0539 at 634.078 kb on + strand, within Shewana3_0539 at 634.105 kb on + strand, within Shewana3_0539 at 634.113 kb on - strand, within Shewana3_0539 at 634.154 kb on - strand, within Shewana3_0539 at 634.156 kb on - strand, within Shewana3_0539 at 634.204 kb on - strand, within Shewana3_0539 at 634.609 kb on - strand at 635.285 kb on + strand, within Shewana3_0540 at 635.354 kb on + strand, within Shewana3_0540
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 632,196 + Shewana3_0537 0.72 +0.4 632,196 + Shewana3_0537 0.72 -0.1 632,196 + Shewana3_0537 0.72 -0.3 632,204 - Shewana3_0537 0.72 +0.0 632,320 - Shewana3_0537 0.80 -0.6 632,320 - Shewana3_0537 0.80 -0.3 632,350 - Shewana3_0537 0.83 +0.4 632,412 - Shewana3_0537 0.87 -2.2 632,672 - -0.5 632,674 + +0.2 632,780 + Shewana3_0538 0.23 +0.3 632,853 + Shewana3_0538 0.40 +0.8 632,861 + Shewana3_0538 0.42 +0.5 632,901 - Shewana3_0538 0.52 +0.2 633,039 + Shewana3_0538 0.85 +0.4 633,039 + Shewana3_0538 0.85 +0.4 633,039 + Shewana3_0538 0.85 +0.1 633,039 + Shewana3_0538 0.85 +0.7 633,039 + Shewana3_0538 0.85 -0.4 633,158 - +0.4 633,208 + -0.4 633,208 + -0.7 633,209 + -0.7 633,209 + -0.5 633,216 - +0.2 633,216 - +0.0 633,216 - +0.6 633,217 - -0.5 633,220 + +0.5 633,220 + -0.3 633,356 + Shewana3_0539 0.14 -2.2 633,399 + Shewana3_0539 0.17 -1.7 633,405 - Shewana3_0539 0.17 +0.4 633,444 - Shewana3_0539 0.20 -0.2 633,503 + Shewana3_0539 0.25 -1.0 633,503 + Shewana3_0539 0.25 -2.2 633,543 + Shewana3_0539 0.28 -2.2 633,543 + Shewana3_0539 0.28 -1.5 633,747 - Shewana3_0539 0.43 -0.1 633,795 + Shewana3_0539 0.46 -0.5 633,846 - Shewana3_0539 0.50 +0.4 633,896 - Shewana3_0539 0.54 -0.3 633,925 - Shewana3_0539 0.56 -0.4 634,078 + Shewana3_0539 0.67 -1.0 634,105 + Shewana3_0539 0.69 -1.2 634,113 - Shewana3_0539 0.70 +0.5 634,154 - Shewana3_0539 0.73 -1.4 634,156 - Shewana3_0539 0.73 -1.7 634,204 - Shewana3_0539 0.76 -0.3 634,609 - -0.1 635,285 + Shewana3_0540 0.50 +0.3 635,354 + Shewana3_0540 0.57 +0.0
Or see this region's nucleotide sequence