Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0534 and Shewana3_0535 are separated by 9 nucleotides Shewana3_0535 and Shewana3_0536 are separated by 4 nucleotides Shewana3_0536 and Shewana3_0537 are separated by 118 nucleotides
Shewana3_0534: Shewana3_0534 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 627,881 to 628,894
_0534
Shewana3_0535: Shewana3_0535 - major facilitator transporter (RefSeq), at 628,904 to 630,172
_0535
Shewana3_0536: Shewana3_0536 - hypothetical protein (RefSeq), at 630,177 to 631,040
_0536
Shewana3_0537: Shewana3_0537 - aspartate kinase (RefSeq), at 631,159 to 632,601
_0537
Position (kb) 628
629
630
631 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 627.932 kb on - strand at 628.165 kb on - strand, within Shewana3_0534 at 628.172 kb on - strand, within Shewana3_0534 at 628.299 kb on - strand, within Shewana3_0534 at 628.407 kb on + strand, within Shewana3_0534 at 628.546 kb on + strand, within Shewana3_0534 at 628.552 kb on + strand, within Shewana3_0534 at 628.654 kb on - strand, within Shewana3_0534 at 628.724 kb on - strand, within Shewana3_0534 at 628.798 kb on + strand at 628.834 kb on - strand at 628.851 kb on - strand at 629.488 kb on + strand, within Shewana3_0535 at 629.644 kb on + strand, within Shewana3_0535 at 629.735 kb on + strand, within Shewana3_0535 at 629.742 kb on + strand, within Shewana3_0535 at 629.775 kb on - strand at 629.816 kb on + strand, within Shewana3_0535 at 630.031 kb on - strand, within Shewana3_0535 at 630.078 kb on + strand at 630.084 kb on - strand at 630.185 kb on - strand at 630.269 kb on + strand, within Shewana3_0536 at 630.381 kb on - strand, within Shewana3_0536 at 630.450 kb on - strand, within Shewana3_0536 at 630.540 kb on - strand, within Shewana3_0536 at 630.763 kb on - strand, within Shewana3_0536 at 630.786 kb on - strand, within Shewana3_0536 at 630.848 kb on + strand, within Shewana3_0536 at 631.016 kb on + strand at 631.016 kb on + strand at 631.016 kb on + strand at 631.024 kb on - strand at 631.024 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 627,932 - +0.3 628,165 - Shewana3_0534 0.28 -0.0 628,172 - Shewana3_0534 0.29 -1.6 628,299 - Shewana3_0534 0.41 -1.3 628,407 + Shewana3_0534 0.52 -0.3 628,546 + Shewana3_0534 0.66 +0.2 628,552 + Shewana3_0534 0.66 -0.1 628,654 - Shewana3_0534 0.76 -0.6 628,724 - Shewana3_0534 0.83 -0.5 628,798 + -0.4 628,834 - -0.9 628,851 - -0.5 629,488 + Shewana3_0535 0.46 -0.2 629,644 + Shewana3_0535 0.58 -0.0 629,735 + Shewana3_0535 0.65 -0.1 629,742 + Shewana3_0535 0.66 -0.2 629,775 - +0.8 629,816 + Shewana3_0535 0.72 +0.0 630,031 - Shewana3_0535 0.89 -1.0 630,078 + -2.1 630,084 - +1.0 630,185 - -2.4 630,269 + Shewana3_0536 0.11 -1.4 630,381 - Shewana3_0536 0.24 -1.1 630,450 - Shewana3_0536 0.32 -1.0 630,540 - Shewana3_0536 0.42 -2.8 630,763 - Shewana3_0536 0.68 -1.1 630,786 - Shewana3_0536 0.70 -0.5 630,848 + Shewana3_0536 0.78 +0.0 631,016 + -0.8 631,016 + +0.1 631,016 + -0.6 631,024 - +0.6 631,024 - +0.3
Or see this region's nucleotide sequence