Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0336 and Shewana3_0337 are separated by 8 nucleotides Shewana3_0337 and Shewana3_0338 overlap by 8 nucleotides
Shewana3_0336: Shewana3_0336 - glycosyl transferase family protein (RefSeq), at 371,833 to 373,653
_0336
Shewana3_0337: Shewana3_0337 - thioester dehydrase family protein (RefSeq), at 373,662 to 374,036
_0337
Shewana3_0338: Shewana3_0338 - aconitate hydratase (RefSeq), at 374,029 to 375,393
_0338
Position (kb) 373
374
375 Strain fitness (log2 ratio) -2
-1
0
1
2 at 372.939 kb on + strand, within Shewana3_0336 at 372.939 kb on + strand, within Shewana3_0336 at 372.947 kb on - strand, within Shewana3_0336 at 372.968 kb on + strand, within Shewana3_0336 at 373.128 kb on - strand, within Shewana3_0336 at 373.142 kb on - strand, within Shewana3_0336 at 373.142 kb on - strand, within Shewana3_0336 at 373.245 kb on + strand, within Shewana3_0336 at 373.264 kb on - strand, within Shewana3_0336 at 373.422 kb on - strand, within Shewana3_0336 at 373.455 kb on - strand, within Shewana3_0336 at 373.470 kb on + strand, within Shewana3_0336 at 373.546 kb on + strand at 373.549 kb on - strand at 373.588 kb on - strand at 374.140 kb on - strand at 374.254 kb on - strand, within Shewana3_0338 at 374.302 kb on - strand, within Shewana3_0338 at 374.507 kb on - strand, within Shewana3_0338 at 374.508 kb on - strand, within Shewana3_0338 at 374.594 kb on + strand, within Shewana3_0338 at 374.602 kb on - strand, within Shewana3_0338 at 374.604 kb on + strand, within Shewana3_0338 at 374.612 kb on - strand, within Shewana3_0338 at 374.612 kb on - strand, within Shewana3_0338 at 374.660 kb on - strand, within Shewana3_0338 at 374.701 kb on - strand, within Shewana3_0338 at 374.715 kb on + strand, within Shewana3_0338 at 374.739 kb on + strand, within Shewana3_0338 at 374.751 kb on + strand, within Shewana3_0338 at 374.763 kb on + strand, within Shewana3_0338 at 374.763 kb on + strand, within Shewana3_0338 at 374.943 kb on + strand, within Shewana3_0338 at 374.943 kb on + strand, within Shewana3_0338 at 374.943 kb on + strand, within Shewana3_0338 at 374.951 kb on - strand, within Shewana3_0338 at 374.951 kb on - strand, within Shewana3_0338 at 374.951 kb on - strand, within Shewana3_0338 at 374.951 kb on - strand, within Shewana3_0338
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 372,939 + Shewana3_0336 0.61 +0.1 372,939 + Shewana3_0336 0.61 -0.0 372,947 - Shewana3_0336 0.61 -2.4 372,968 + Shewana3_0336 0.62 -0.2 373,128 - Shewana3_0336 0.71 -0.5 373,142 - Shewana3_0336 0.72 -0.4 373,142 - Shewana3_0336 0.72 -0.0 373,245 + Shewana3_0336 0.78 +0.3 373,264 - Shewana3_0336 0.79 -0.0 373,422 - Shewana3_0336 0.87 +0.0 373,455 - Shewana3_0336 0.89 -1.4 373,470 + Shewana3_0336 0.90 -0.1 373,546 + -0.4 373,549 - -0.4 373,588 - -0.2 374,140 - +2.5 374,254 - Shewana3_0338 0.16 -0.3 374,302 - Shewana3_0338 0.20 -0.4 374,507 - Shewana3_0338 0.35 -0.2 374,508 - Shewana3_0338 0.35 -0.2 374,594 + Shewana3_0338 0.41 +0.1 374,602 - Shewana3_0338 0.42 -0.4 374,604 + Shewana3_0338 0.42 +0.2 374,612 - Shewana3_0338 0.43 -0.6 374,612 - Shewana3_0338 0.43 -0.2 374,660 - Shewana3_0338 0.46 -0.3 374,701 - Shewana3_0338 0.49 +0.1 374,715 + Shewana3_0338 0.50 +0.0 374,739 + Shewana3_0338 0.52 +0.2 374,751 + Shewana3_0338 0.53 -0.1 374,763 + Shewana3_0338 0.54 -0.0 374,763 + Shewana3_0338 0.54 +0.2 374,943 + Shewana3_0338 0.67 -0.1 374,943 + Shewana3_0338 0.67 +0.4 374,943 + Shewana3_0338 0.67 -0.0 374,951 - Shewana3_0338 0.68 -0.9 374,951 - Shewana3_0338 0.68 -0.6 374,951 - Shewana3_0338 0.68 -0.6 374,951 - Shewana3_0338 0.68 +0.3
Or see this region's nucleotide sequence