Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0270 and Shewana3_0271 are separated by 36 nucleotides Shewana3_0271 and Shewana3_0272 are separated by 81 nucleotides Shewana3_0272 and Shewana3_0273 are separated by 303 nucleotides
Shewana3_0270: Shewana3_0270 - MOSC domain-containing protein (RefSeq), at 304,385 to 305,080
_0270
Shewana3_0271: Shewana3_0271 - hypothetical protein (RefSeq), at 305,117 to 305,473
_0271
Shewana3_0272: Shewana3_0272 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 305,555 to 307,471
_0272
Shewana3_0273: Shewana3_0273 - electron transfer flavoprotein-ubiquinone oxidoreductase (RefSeq), at 307,775 to 309,424
_0273
Position (kb) 305
306
307
308 Strain fitness (log2 ratio) -1
0
1 at 304.603 kb on - strand, within Shewana3_0270 at 304.795 kb on - strand, within Shewana3_0270 at 304.804 kb on + strand, within Shewana3_0270 at 304.880 kb on - strand, within Shewana3_0270 at 304.880 kb on - strand, within Shewana3_0270 at 305.104 kb on - strand at 305.437 kb on - strand, within Shewana3_0271 at 305.554 kb on - strand at 305.608 kb on + strand at 305.688 kb on - strand at 305.758 kb on + strand, within Shewana3_0272 at 305.758 kb on + strand, within Shewana3_0272 at 305.837 kb on + strand, within Shewana3_0272 at 305.845 kb on - strand, within Shewana3_0272 at 305.845 kb on - strand, within Shewana3_0272 at 305.845 kb on - strand, within Shewana3_0272 at 305.929 kb on + strand, within Shewana3_0272 at 305.974 kb on - strand, within Shewana3_0272 at 306.085 kb on - strand, within Shewana3_0272 at 306.085 kb on - strand, within Shewana3_0272 at 306.085 kb on - strand, within Shewana3_0272 at 306.255 kb on - strand, within Shewana3_0272 at 306.377 kb on - strand, within Shewana3_0272 at 306.699 kb on - strand, within Shewana3_0272 at 307.323 kb on - strand at 307.333 kb on - strand at 307.351 kb on + strand at 307.592 kb on - strand at 307.798 kb on - strand at 307.893 kb on + strand at 307.941 kb on + strand, within Shewana3_0273 at 307.975 kb on + strand, within Shewana3_0273 at 308.022 kb on - strand, within Shewana3_0273 at 308.066 kb on - strand, within Shewana3_0273 at 308.121 kb on + strand, within Shewana3_0273 at 308.377 kb on - strand, within Shewana3_0273 at 308.401 kb on - strand, within Shewana3_0273 at 308.412 kb on + strand, within Shewana3_0273
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 304,603 - Shewana3_0270 0.31 -1.1 304,795 - Shewana3_0270 0.59 -0.2 304,804 + Shewana3_0270 0.60 -0.1 304,880 - Shewana3_0270 0.71 -0.1 304,880 - Shewana3_0270 0.71 +0.8 305,104 - -0.9 305,437 - Shewana3_0271 0.90 -1.2 305,554 - +0.2 305,608 + -1.4 305,688 - +0.1 305,758 + Shewana3_0272 0.11 -0.7 305,758 + Shewana3_0272 0.11 -0.4 305,837 + Shewana3_0272 0.15 -0.4 305,845 - Shewana3_0272 0.15 +0.8 305,845 - Shewana3_0272 0.15 +0.6 305,845 - Shewana3_0272 0.15 +0.4 305,929 + Shewana3_0272 0.20 -0.7 305,974 - Shewana3_0272 0.22 +0.7 306,085 - Shewana3_0272 0.28 +0.7 306,085 - Shewana3_0272 0.28 -0.0 306,085 - Shewana3_0272 0.28 +0.7 306,255 - Shewana3_0272 0.37 -0.1 306,377 - Shewana3_0272 0.43 +0.2 306,699 - Shewana3_0272 0.60 -0.8 307,323 - -1.1 307,333 - -0.6 307,351 + -0.4 307,592 - -0.3 307,798 - +0.6 307,893 + +0.1 307,941 + Shewana3_0273 0.10 +0.1 307,975 + Shewana3_0273 0.12 +0.2 308,022 - Shewana3_0273 0.15 +0.3 308,066 - Shewana3_0273 0.18 +0.4 308,121 + Shewana3_0273 0.21 -0.5 308,377 - Shewana3_0273 0.36 +0.5 308,401 - Shewana3_0273 0.38 +0.5 308,412 + Shewana3_0273 0.39 -0.3
Or see this region's nucleotide sequence