Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0262

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0261 and Shewana3_0262 are separated by 149 nucleotidesShewana3_0262 and Shewana3_0263 are separated by 116 nucleotidesShewana3_0263 and Shewana3_0264 are separated by 311 nucleotides Shewana3_0261: Shewana3_0261 - iron-containing alcohol dehydrogenase (RefSeq), at 292,460 to 293,617 _0261 Shewana3_0262: Shewana3_0262 - TetR family transcriptional regulator (RefSeq), at 293,767 to 294,363 _0262 Shewana3_0263: Shewana3_0263 - hypothetical protein (RefSeq), at 294,480 to 294,791 _0263 Shewana3_0264: Shewana3_0264 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 295,103 to 297,058 _0264 Position (kb) 293 294 295Strain fitness (log2 ratio) -2 -1 0 1at 292.786 kb on - strand, within Shewana3_0261at 292.807 kb on + strand, within Shewana3_0261at 292.808 kb on - strand, within Shewana3_0261at 292.835 kb on + strand, within Shewana3_0261at 292.835 kb on + strand, within Shewana3_0261at 292.835 kb on + strand, within Shewana3_0261at 292.835 kb on + strand, within Shewana3_0261at 292.843 kb on - strand, within Shewana3_0261at 292.849 kb on - strand, within Shewana3_0261at 292.907 kb on + strand, within Shewana3_0261at 292.922 kb on + strand, within Shewana3_0261at 292.977 kb on + strand, within Shewana3_0261at 292.985 kb on - strand, within Shewana3_0261at 292.990 kb on - strand, within Shewana3_0261at 292.993 kb on - strand, within Shewana3_0261at 293.084 kb on + strand, within Shewana3_0261at 293.210 kb on + strand, within Shewana3_0261at 293.210 kb on + strand, within Shewana3_0261at 293.408 kb on + strand, within Shewana3_0261at 293.539 kb on + strandat 293.539 kb on + strandat 293.628 kb on + strandat 293.805 kb on + strandat 293.805 kb on + strandat 293.813 kb on - strandat 293.972 kb on - strand, within Shewana3_0262at 294.005 kb on + strand, within Shewana3_0262at 294.070 kb on - strand, within Shewana3_0262at 294.070 kb on - strand, within Shewana3_0262at 294.130 kb on - strand, within Shewana3_0262at 294.169 kb on - strand, within Shewana3_0262at 294.169 kb on - strand, within Shewana3_0262at 294.191 kb on - strand, within Shewana3_0262at 294.279 kb on - strand, within Shewana3_0262at 294.642 kb on - strand, within Shewana3_0263at 294.648 kb on - strand, within Shewana3_0263at 294.718 kb on - strand, within Shewana3_0263at 295.258 kb on + strandat 295.258 kb on + strandat 295.298 kb on - strandat 295.331 kb on + strand, within Shewana3_0264

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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292,786 - Shewana3_0261 0.28 +0.2
292,807 + Shewana3_0261 0.30 -0.8
292,808 - Shewana3_0261 0.30 +0.6
292,835 + Shewana3_0261 0.32 -0.7
292,835 + Shewana3_0261 0.32 -0.5
292,835 + Shewana3_0261 0.32 -0.1
292,835 + Shewana3_0261 0.32 -1.2
292,843 - Shewana3_0261 0.33 -0.3
292,849 - Shewana3_0261 0.34 +0.2
292,907 + Shewana3_0261 0.39 -1.0
292,922 + Shewana3_0261 0.40 -0.1
292,977 + Shewana3_0261 0.45 -0.1
292,985 - Shewana3_0261 0.45 -0.6
292,990 - Shewana3_0261 0.46 +0.5
292,993 - Shewana3_0261 0.46 -0.4
293,084 + Shewana3_0261 0.54 -0.5
293,210 + Shewana3_0261 0.65 -1.7
293,210 + Shewana3_0261 0.65 -1.1
293,408 + Shewana3_0261 0.82 +0.4
293,539 + +0.0
293,539 + -1.4
293,628 + +0.1
293,805 + -1.9
293,805 + -0.4
293,813 - +0.1
293,972 - Shewana3_0262 0.34 +0.2
294,005 + Shewana3_0262 0.40 -0.8
294,070 - Shewana3_0262 0.51 +1.0
294,070 - Shewana3_0262 0.51 +0.2
294,130 - Shewana3_0262 0.61 +0.2
294,169 - Shewana3_0262 0.67 +0.4
294,169 - Shewana3_0262 0.67 -0.3
294,191 - Shewana3_0262 0.71 +0.1
294,279 - Shewana3_0262 0.86 +0.4
294,642 - Shewana3_0263 0.52 -0.1
294,648 - Shewana3_0263 0.54 -0.6
294,718 - Shewana3_0263 0.76 +0.2
295,258 + +0.5
295,258 + -0.7
295,298 - -1.1
295,331 + Shewana3_0264 0.12 -1.1

Or see this region's nucleotide sequence