Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0164 and Shewana3_0165 overlap by 4 nucleotides Shewana3_0165 and Shewana3_0166 overlap by 14 nucleotides Shewana3_0166 and Shewana3_0167 are separated by 234 nucleotides
Shewana3_0164: Shewana3_0164 - phytanoyl-CoA dioxygenase (RefSeq), at 186,990 to 189,002
_0164
Shewana3_0165: Shewana3_0165 - hypothetical protein (RefSeq), at 188,999 to 190,165
_0165
Shewana3_0166: Shewana3_0166 - GCN5-related N-acetyltransferase (RefSeq), at 190,152 to 190,640
_0166
Shewana3_0167: Shewana3_0167 - phage tail collar domain-containing protein (RefSeq), at 190,875 to 191,510
_0167
Position (kb) 188
189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 188.148 kb on + strand, within Shewana3_0164 at 188.276 kb on + strand, within Shewana3_0164 at 188.276 kb on + strand, within Shewana3_0164 at 188.305 kb on - strand, within Shewana3_0164 at 188.310 kb on - strand, within Shewana3_0164 at 188.376 kb on + strand, within Shewana3_0164 at 188.378 kb on - strand, within Shewana3_0164 at 188.385 kb on - strand, within Shewana3_0164 at 188.385 kb on - strand, within Shewana3_0164 at 188.637 kb on - strand, within Shewana3_0164 at 188.839 kb on + strand at 188.859 kb on - strand at 188.949 kb on + strand at 189.138 kb on + strand, within Shewana3_0165 at 189.241 kb on + strand, within Shewana3_0165 at 189.344 kb on - strand, within Shewana3_0165 at 189.344 kb on - strand, within Shewana3_0165 at 189.346 kb on + strand, within Shewana3_0165 at 189.346 kb on + strand, within Shewana3_0165 at 189.347 kb on + strand, within Shewana3_0165 at 189.354 kb on - strand, within Shewana3_0165 at 189.366 kb on - strand, within Shewana3_0165 at 189.459 kb on + strand, within Shewana3_0165 at 189.469 kb on + strand, within Shewana3_0165 at 189.495 kb on + strand, within Shewana3_0165 at 189.517 kb on + strand, within Shewana3_0165 at 189.537 kb on - strand, within Shewana3_0165 at 189.577 kb on - strand, within Shewana3_0165 at 189.589 kb on + strand, within Shewana3_0165 at 189.594 kb on + strand, within Shewana3_0165 at 189.594 kb on + strand, within Shewana3_0165 at 189.602 kb on - strand, within Shewana3_0165 at 189.678 kb on + strand, within Shewana3_0165 at 189.760 kb on + strand, within Shewana3_0165 at 189.768 kb on - strand, within Shewana3_0165 at 189.768 kb on - strand, within Shewana3_0165 at 189.770 kb on + strand, within Shewana3_0165 at 189.941 kb on + strand, within Shewana3_0165 at 189.950 kb on + strand, within Shewana3_0165 at 189.950 kb on + strand, within Shewana3_0165 at 189.958 kb on - strand, within Shewana3_0165 at 190.005 kb on + strand, within Shewana3_0165 at 190.138 kb on - strand at 190.172 kb on - strand at 190.189 kb on + strand at 190.197 kb on - strand at 190.397 kb on + strand, within Shewana3_0166 at 190.478 kb on - strand, within Shewana3_0166 at 190.562 kb on + strand, within Shewana3_0166 at 190.836 kb on + strand at 190.970 kb on + strand, within Shewana3_0167 at 191.034 kb on + strand, within Shewana3_0167 at 191.053 kb on + strand, within Shewana3_0167
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 188,148 + Shewana3_0164 0.58 -1.8 188,276 + Shewana3_0164 0.64 -0.9 188,276 + Shewana3_0164 0.64 +0.0 188,305 - Shewana3_0164 0.65 -1.2 188,310 - Shewana3_0164 0.66 -2.9 188,376 + Shewana3_0164 0.69 -2.8 188,378 - Shewana3_0164 0.69 -1.5 188,385 - Shewana3_0164 0.69 -0.6 188,385 - Shewana3_0164 0.69 -1.5 188,637 - Shewana3_0164 0.82 -1.1 188,839 + -1.0 188,859 - -0.8 188,949 + +0.9 189,138 + Shewana3_0165 0.12 -0.3 189,241 + Shewana3_0165 0.21 -1.2 189,344 - Shewana3_0165 0.30 -0.2 189,344 - Shewana3_0165 0.30 +0.0 189,346 + Shewana3_0165 0.30 -0.6 189,346 + Shewana3_0165 0.30 -0.7 189,347 + Shewana3_0165 0.30 -1.3 189,354 - Shewana3_0165 0.30 -0.1 189,366 - Shewana3_0165 0.31 +0.2 189,459 + Shewana3_0165 0.39 -0.6 189,469 + Shewana3_0165 0.40 -0.1 189,495 + Shewana3_0165 0.43 +0.0 189,517 + Shewana3_0165 0.44 -0.6 189,537 - Shewana3_0165 0.46 -0.0 189,577 - Shewana3_0165 0.50 -0.5 189,589 + Shewana3_0165 0.51 -0.6 189,594 + Shewana3_0165 0.51 +0.3 189,594 + Shewana3_0165 0.51 +0.2 189,602 - Shewana3_0165 0.52 -0.2 189,678 + Shewana3_0165 0.58 -1.0 189,760 + Shewana3_0165 0.65 -0.3 189,768 - Shewana3_0165 0.66 -0.0 189,768 - Shewana3_0165 0.66 -0.9 189,770 + Shewana3_0165 0.66 -1.0 189,941 + Shewana3_0165 0.81 -0.4 189,950 + Shewana3_0165 0.81 +0.6 189,950 + Shewana3_0165 0.81 +0.1 189,958 - Shewana3_0165 0.82 -1.1 190,005 + Shewana3_0165 0.86 -1.1 190,138 - +0.1 190,172 - -0.4 190,189 + -1.6 190,197 - -0.5 190,397 + Shewana3_0166 0.50 +0.2 190,478 - Shewana3_0166 0.67 -0.2 190,562 + Shewana3_0166 0.84 -0.2 190,836 + +0.2 190,970 + Shewana3_0167 0.15 -0.2 191,034 + Shewana3_0167 0.25 -0.6 191,053 + Shewana3_0167 0.28 -0.8
Or see this region's nucleotide sequence