Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0145

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0144 and Shewana3_0145 are separated by 406 nucleotidesShewana3_0145 and Shewana3_0146 are separated by 118 nucleotides Shewana3_0144: Shewana3_0144 - hypothetical protein (RefSeq), at 165,232 to 166,965 _0144 Shewana3_0145: Shewana3_0145 - OmpA/MotB domain-containing protein (RefSeq), at 167,372 to 168,835 _0145 Shewana3_0146: Shewana3_0146 - AbgT putative transporter (RefSeq), at 168,954 to 170,513 _0146 Position (kb) 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1at 166.520 kb on + strand, within Shewana3_0144at 166.528 kb on - strand, within Shewana3_0144at 166.568 kb on - strand, within Shewana3_0144at 166.589 kb on + strand, within Shewana3_0144at 166.591 kb on - strand, within Shewana3_0144at 166.602 kb on - strand, within Shewana3_0144at 166.637 kb on + strand, within Shewana3_0144at 166.644 kb on - strand, within Shewana3_0144at 166.670 kb on + strand, within Shewana3_0144at 166.731 kb on + strand, within Shewana3_0144at 166.737 kb on - strand, within Shewana3_0144at 166.752 kb on + strand, within Shewana3_0144at 166.752 kb on + strand, within Shewana3_0144at 166.760 kb on - strand, within Shewana3_0144at 166.770 kb on - strand, within Shewana3_0144at 166.770 kb on - strand, within Shewana3_0144at 166.770 kb on - strand, within Shewana3_0144at 166.822 kb on + strandat 166.902 kb on + strandat 167.008 kb on - strandat 167.061 kb on - strandat 167.257 kb on + strandat 167.259 kb on + strandat 167.358 kb on - strandat 167.389 kb on + strandat 167.397 kb on - strandat 167.432 kb on - strandat 167.618 kb on + strand, within Shewana3_0145at 167.620 kb on + strand, within Shewana3_0145at 167.628 kb on - strand, within Shewana3_0145at 167.649 kb on + strand, within Shewana3_0145at 167.683 kb on - strand, within Shewana3_0145at 167.712 kb on - strand, within Shewana3_0145at 167.746 kb on + strand, within Shewana3_0145at 167.773 kb on - strand, within Shewana3_0145at 168.034 kb on - strand, within Shewana3_0145at 168.048 kb on + strand, within Shewana3_0145at 168.088 kb on + strand, within Shewana3_0145at 168.096 kb on - strand, within Shewana3_0145at 168.101 kb on - strand, within Shewana3_0145at 168.243 kb on + strand, within Shewana3_0145at 168.261 kb on - strand, within Shewana3_0145at 168.276 kb on + strand, within Shewana3_0145at 168.363 kb on + strand, within Shewana3_0145at 168.371 kb on - strand, within Shewana3_0145at 168.371 kb on - strand, within Shewana3_0145at 168.371 kb on - strand, within Shewana3_0145at 168.388 kb on + strand, within Shewana3_0145at 168.424 kb on + strand, within Shewana3_0145at 168.424 kb on + strand, within Shewana3_0145at 168.479 kb on + strand, within Shewana3_0145at 168.493 kb on - strand, within Shewana3_0145at 168.532 kb on - strand, within Shewana3_0145at 168.768 kb on + strandat 168.878 kb on + strandat 168.927 kb on - strandat 168.932 kb on - strandat 168.952 kb on + strandat 168.952 kb on + strandat 168.952 kb on + strandat 168.952 kb on + strandat 168.952 kb on + strandat 168.960 kb on - strandat 168.960 kb on - strandat 168.960 kb on - strandat 168.960 kb on - strandat 168.960 kb on - strandat 168.960 kb on - strandat 168.960 kb on - strandat 168.960 kb on - strandat 168.960 kb on - strandat 169.041 kb on - strandat 169.234 kb on - strand, within Shewana3_0146at 169.313 kb on + strand, within Shewana3_0146at 169.406 kb on + strand, within Shewana3_0146at 169.413 kb on + strand, within Shewana3_0146at 169.414 kb on - strand, within Shewana3_0146at 169.539 kb on - strand, within Shewana3_0146at 169.595 kb on - strand, within Shewana3_0146at 169.595 kb on - strand, within Shewana3_0146at 169.624 kb on + strand, within Shewana3_0146

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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166,520 + Shewana3_0144 0.74 -0.1
166,528 - Shewana3_0144 0.75 -1.2
166,568 - Shewana3_0144 0.77 -2.1
166,589 + Shewana3_0144 0.78 +0.1
166,591 - Shewana3_0144 0.78 -2.1
166,602 - Shewana3_0144 0.79 -0.4
166,637 + Shewana3_0144 0.81 -1.2
166,644 - Shewana3_0144 0.81 +0.5
166,670 + Shewana3_0144 0.83 -0.6
166,731 + Shewana3_0144 0.86 -0.4
166,737 - Shewana3_0144 0.87 -0.5
166,752 + Shewana3_0144 0.88 +0.4
166,752 + Shewana3_0144 0.88 -0.4
166,760 - Shewana3_0144 0.88 -0.2
166,770 - Shewana3_0144 0.89 -1.0
166,770 - Shewana3_0144 0.89 -0.3
166,770 - Shewana3_0144 0.89 -0.4
166,822 + -0.2
166,902 + -0.6
167,008 - -1.1
167,061 - -1.0
167,257 + -0.7
167,259 + -0.1
167,358 - +0.1
167,389 + -1.0
167,397 - -0.1
167,432 - -0.3
167,618 + Shewana3_0145 0.17 -0.7
167,620 + Shewana3_0145 0.17 -0.5
167,628 - Shewana3_0145 0.17 -2.2
167,649 + Shewana3_0145 0.19 +0.2
167,683 - Shewana3_0145 0.21 -0.3
167,712 - Shewana3_0145 0.23 -0.3
167,746 + Shewana3_0145 0.26 -0.0
167,773 - Shewana3_0145 0.27 -0.1
168,034 - Shewana3_0145 0.45 -1.1
168,048 + Shewana3_0145 0.46 +0.3
168,088 + Shewana3_0145 0.49 +0.2
168,096 - Shewana3_0145 0.49 -0.1
168,101 - Shewana3_0145 0.50 -1.2
168,243 + Shewana3_0145 0.59 -0.0
168,261 - Shewana3_0145 0.61 -1.1
168,276 + Shewana3_0145 0.62 +0.2
168,363 + Shewana3_0145 0.68 +0.2
168,371 - Shewana3_0145 0.68 +0.1
168,371 - Shewana3_0145 0.68 -1.5
168,371 - Shewana3_0145 0.68 -1.4
168,388 + Shewana3_0145 0.69 +0.2
168,424 + Shewana3_0145 0.72 +0.2
168,424 + Shewana3_0145 0.72 +0.4
168,479 + Shewana3_0145 0.76 -0.2
168,493 - Shewana3_0145 0.77 -3.4
168,532 - Shewana3_0145 0.79 -0.3
168,768 + -0.1
168,878 + -0.5
168,927 - -0.2
168,932 - +0.0
168,952 + -0.7
168,952 + -1.2
168,952 + -0.2
168,952 + +0.1
168,952 + -1.5
168,960 - +0.3
168,960 - +0.0
168,960 - +0.0
168,960 - +0.2
168,960 - +0.5
168,960 - +0.2
168,960 - +0.5
168,960 - +0.2
168,960 - -0.4
169,041 - +0.2
169,234 - Shewana3_0146 0.18 +0.1
169,313 + Shewana3_0146 0.23 -1.1
169,406 + Shewana3_0146 0.29 +0.1
169,413 + Shewana3_0146 0.29 -1.1
169,414 - Shewana3_0146 0.29 +0.5
169,539 - Shewana3_0146 0.38 -0.1
169,595 - Shewana3_0146 0.41 -0.3
169,595 - Shewana3_0146 0.41 -0.3
169,624 + Shewana3_0146 0.43 -1.0

Or see this region's nucleotide sequence