Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0133 and ribB are separated by 363 nucleotides ribB and Shewana3_0135 are separated by 684 nucleotides
Shewana3_0133: Shewana3_0133 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 148,465 to 151,698
_0133
Shewana3_0134: ribB - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 152,062 to 152,715
ribB
Shewana3_0135: Shewana3_0135 - oligopeptidase B (RefSeq), at 153,400 to 155,535
_0135
Position (kb)
152
153 Strain fitness (log2 ratio)
-2
-1
0
1 at 151.200 kb on + strand, within Shewana3_0133 at 151.220 kb on + strand, within Shewana3_0133 at 151.286 kb on + strand, within Shewana3_0133 at 151.316 kb on - strand, within Shewana3_0133 at 151.324 kb on - strand, within Shewana3_0133 at 151.324 kb on - strand, within Shewana3_0133 at 151.324 kb on - strand, within Shewana3_0133 at 151.324 kb on - strand, within Shewana3_0133 at 151.360 kb on + strand, within Shewana3_0133 at 151.368 kb on - strand, within Shewana3_0133 at 151.381 kb on + strand at 151.381 kb on + strand at 151.389 kb on - strand at 151.389 kb on - strand at 151.424 kb on + strand at 151.431 kb on + strand at 151.475 kb on + strand at 151.524 kb on + strand at 151.673 kb on - strand at 152.074 kb on + strand at 152.114 kb on - strand at 152.123 kb on + strand at 152.131 kb on - strand, within ribB at 152.131 kb on - strand, within ribB at 152.177 kb on - strand, within ribB at 152.305 kb on + strand, within ribB at 152.342 kb on - strand, within ribB at 152.486 kb on - strand, within ribB at 152.707 kb on - strand at 152.792 kb on + strand at 152.825 kb on + strand at 152.864 kb on + strand at 152.872 kb on - strand at 152.955 kb on - strand at 153.015 kb on + strand at 153.271 kb on + strand at 153.271 kb on + strand at 153.279 kb on - strand at 153.279 kb on - strand at 153.279 kb on - strand at 153.279 kb on - strand at 153.326 kb on - strand at 153.337 kb on + strand at 153.638 kb on - strand, within Shewana3_0135 at 153.643 kb on - strand, within Shewana3_0135
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 151,200 + Shewana3_0133 0.85 -1.7 151,220 + Shewana3_0133 0.85 +0.2 151,286 + Shewana3_0133 0.87 +0.0 151,316 - Shewana3_0133 0.88 +0.1 151,324 - Shewana3_0133 0.88 -1.4 151,324 - Shewana3_0133 0.88 -2.2 151,324 - Shewana3_0133 0.88 -2.1 151,324 - Shewana3_0133 0.88 -1.3 151,360 + Shewana3_0133 0.90 +0.1 151,368 - Shewana3_0133 0.90 -0.9 151,381 + -0.1 151,381 + -0.0 151,389 - +0.3 151,389 - +0.2 151,424 + -0.0 151,431 + -0.1 151,475 + -0.2 151,524 + -0.1 151,673 - -0.2 152,074 + -1.1 152,114 - +0.2 152,123 + -0.7 152,131 - ribB Shewana3_0134 0.11 +0.2 152,131 - ribB Shewana3_0134 0.11 +0.4 152,177 - ribB Shewana3_0134 0.18 +0.3 152,305 + ribB Shewana3_0134 0.37 -1.2 152,342 - ribB Shewana3_0134 0.43 +0.9 152,486 - ribB Shewana3_0134 0.65 -0.1 152,707 - +0.1 152,792 + -1.5 152,825 + -0.7 152,864 + +0.1 152,872 - -1.0 152,955 - +0.1 153,015 + -0.2 153,271 + -0.2 153,271 + -0.1 153,279 - -0.8 153,279 - +0.3 153,279 - -0.7 153,279 - +0.1 153,326 - -0.1 153,337 + +0.4 153,638 - Shewana3_0135 0.11 +0.2 153,643 - Shewana3_0135 0.11 -0.2
Or see this region's nucleotide sequence