Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0134

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0133 and ribB are separated by 363 nucleotidesribB and Shewana3_0135 are separated by 684 nucleotides Shewana3_0133: Shewana3_0133 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 148,465 to 151,698 _0133 Shewana3_0134: ribB - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 152,062 to 152,715 ribB Shewana3_0135: Shewana3_0135 - oligopeptidase B (RefSeq), at 153,400 to 155,535 _0135 Position (kb) 152 153Strain fitness (log2 ratio) -2 -1 0 1at 151.200 kb on + strand, within Shewana3_0133at 151.220 kb on + strand, within Shewana3_0133at 151.286 kb on + strand, within Shewana3_0133at 151.316 kb on - strand, within Shewana3_0133at 151.324 kb on - strand, within Shewana3_0133at 151.324 kb on - strand, within Shewana3_0133at 151.324 kb on - strand, within Shewana3_0133at 151.324 kb on - strand, within Shewana3_0133at 151.360 kb on + strand, within Shewana3_0133at 151.368 kb on - strand, within Shewana3_0133at 151.381 kb on + strandat 151.381 kb on + strandat 151.389 kb on - strandat 151.389 kb on - strandat 151.424 kb on + strandat 151.431 kb on + strandat 151.475 kb on + strandat 151.524 kb on + strandat 151.673 kb on - strandat 152.074 kb on + strandat 152.114 kb on - strandat 152.123 kb on + strandat 152.131 kb on - strand, within ribBat 152.131 kb on - strand, within ribBat 152.177 kb on - strand, within ribBat 152.305 kb on + strand, within ribBat 152.342 kb on - strand, within ribBat 152.486 kb on - strand, within ribBat 152.707 kb on - strandat 152.792 kb on + strandat 152.825 kb on + strandat 152.864 kb on + strandat 152.872 kb on - strandat 152.955 kb on - strandat 153.015 kb on + strandat 153.271 kb on + strandat 153.271 kb on + strandat 153.279 kb on - strandat 153.279 kb on - strandat 153.279 kb on - strandat 153.279 kb on - strandat 153.326 kb on - strandat 153.337 kb on + strandat 153.638 kb on - strand, within Shewana3_0135at 153.643 kb on - strand, within Shewana3_0135

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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151,200 + Shewana3_0133 0.85 -1.7
151,220 + Shewana3_0133 0.85 +0.2
151,286 + Shewana3_0133 0.87 +0.0
151,316 - Shewana3_0133 0.88 +0.1
151,324 - Shewana3_0133 0.88 -1.4
151,324 - Shewana3_0133 0.88 -2.2
151,324 - Shewana3_0133 0.88 -2.1
151,324 - Shewana3_0133 0.88 -1.3
151,360 + Shewana3_0133 0.90 +0.1
151,368 - Shewana3_0133 0.90 -0.9
151,381 + -0.1
151,381 + -0.0
151,389 - +0.3
151,389 - +0.2
151,424 + -0.0
151,431 + -0.1
151,475 + -0.2
151,524 + -0.1
151,673 - -0.2
152,074 + -1.1
152,114 - +0.2
152,123 + -0.7
152,131 - ribB Shewana3_0134 0.11 +0.2
152,131 - ribB Shewana3_0134 0.11 +0.4
152,177 - ribB Shewana3_0134 0.18 +0.3
152,305 + ribB Shewana3_0134 0.37 -1.2
152,342 - ribB Shewana3_0134 0.43 +0.9
152,486 - ribB Shewana3_0134 0.65 -0.1
152,707 - +0.1
152,792 + -1.5
152,825 + -0.7
152,864 + +0.1
152,872 - -1.0
152,955 - +0.1
153,015 + -0.2
153,271 + -0.2
153,271 + -0.1
153,279 - -0.8
153,279 - +0.3
153,279 - -0.7
153,279 - +0.1
153,326 - -0.1
153,337 + +0.4
153,638 - Shewana3_0135 0.11 +0.2
153,643 - Shewana3_0135 0.11 -0.2

Or see this region's nucleotide sequence