Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0005

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0107 and Shewana3_R0005 overlap by 125 nucleotidesShewana3_R0005 and Shewana3_0108 are separated by 141 nucleotides Shewana3_0107: Shewana3_0107 - selenocysteine-specific translation elongation factor SelB (RefSeq), at 122,540 to 124,561 _0107 Shewana3_R0005: Shewana3_R0005 - tRNA-Sec (RefSeq), at 124,437 to 124,527 _R0005 Shewana3_0108: Shewana3_0108 - formate dehydrogenase accessory protein (RefSeq), at 124,669 to 125,505 _0108 Position (kb) 124 125Strain fitness (log2 ratio) -3 -2 -1 0 1at 123.482 kb on - strand, within Shewana3_0107at 123.794 kb on + strand, within Shewana3_0107at 123.874 kb on - strand, within Shewana3_0107at 123.934 kb on - strand, within Shewana3_0107at 123.963 kb on - strand, within Shewana3_0107at 124.105 kb on - strand, within Shewana3_0107at 124.172 kb on + strand, within Shewana3_0107at 124.241 kb on + strand, within Shewana3_0107at 124.268 kb on - strand, within Shewana3_0107at 124.326 kb on + strand, within Shewana3_0107at 124.366 kb on - strandat 124.441 kb on + strandat 124.460 kb on + strandat 124.460 kb on + strandat 124.460 kb on + strandat 124.468 kb on - strandat 124.468 kb on - strandat 124.468 kb on - strandat 124.716 kb on - strandat 124.723 kb on - strandat 124.794 kb on + strand, within Shewana3_0108at 124.810 kb on - strand, within Shewana3_0108at 125.047 kb on + strand, within Shewana3_0108at 125.097 kb on + strand, within Shewana3_0108at 125.102 kb on + strand, within Shewana3_0108at 125.102 kb on + strand, within Shewana3_0108at 125.110 kb on - strand, within Shewana3_0108at 125.110 kb on - strand, within Shewana3_0108at 125.110 kb on - strand, within Shewana3_0108at 125.112 kb on + strand, within Shewana3_0108at 125.140 kb on - strand, within Shewana3_0108at 125.140 kb on - strand, within Shewana3_0108at 125.256 kb on + strand, within Shewana3_0108at 125.289 kb on - strand, within Shewana3_0108at 125.289 kb on - strand, within Shewana3_0108at 125.314 kb on + strand, within Shewana3_0108

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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123,482 - Shewana3_0107 0.47 -0.5
123,794 + Shewana3_0107 0.62 -0.2
123,874 - Shewana3_0107 0.66 -0.4
123,934 - Shewana3_0107 0.69 -0.2
123,963 - Shewana3_0107 0.70 +0.0
124,105 - Shewana3_0107 0.77 +0.3
124,172 + Shewana3_0107 0.81 -0.4
124,241 + Shewana3_0107 0.84 -0.7
124,268 - Shewana3_0107 0.85 -0.2
124,326 + Shewana3_0107 0.88 -0.3
124,366 - -0.3
124,441 + -0.3
124,460 + -0.1
124,460 + -0.4
124,460 + -0.8
124,468 - -1.1
124,468 - -0.4
124,468 - +0.2
124,716 - -2.9
124,723 - -2.1
124,794 + Shewana3_0108 0.15 +0.2
124,810 - Shewana3_0108 0.17 -0.8
125,047 + Shewana3_0108 0.45 -0.7
125,097 + Shewana3_0108 0.51 -0.3
125,102 + Shewana3_0108 0.52 -0.5
125,102 + Shewana3_0108 0.52 -0.1
125,110 - Shewana3_0108 0.53 -0.6
125,110 - Shewana3_0108 0.53 -1.1
125,110 - Shewana3_0108 0.53 -3.0
125,112 + Shewana3_0108 0.53 -0.7
125,140 - Shewana3_0108 0.56 -1.3
125,140 - Shewana3_0108 0.56 -1.8
125,256 + Shewana3_0108 0.70 -0.2
125,289 - Shewana3_0108 0.74 -0.2
125,289 - Shewana3_0108 0.74 -1.3
125,314 + Shewana3_0108 0.77 -0.4

Or see this region's nucleotide sequence