Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0089 and Shewana3_0090 are separated by 363 nucleotides Shewana3_0090 and Shewana3_0091 are separated by 92 nucleotides
Shewana3_0089: Shewana3_0089 - 2,3-diketo-5-methylthio-1-phosphopentane phosphatase (RefSeq), at 100,534 to 101,214
_0089
Shewana3_0090: Shewana3_0090 - hypothetical protein (RefSeq), at 101,578 to 102,012
_0090
Shewana3_0091: Shewana3_0091 - hypothetical protein (RefSeq), at 102,105 to 103,118
_0091
Position (kb) 101
102
103 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 100.605 kb on + strand, within Shewana3_0089 at 100.605 kb on + strand, within Shewana3_0089 at 100.640 kb on + strand, within Shewana3_0089 at 100.640 kb on + strand, within Shewana3_0089 at 100.694 kb on - strand, within Shewana3_0089 at 100.728 kb on - strand, within Shewana3_0089 at 100.827 kb on - strand, within Shewana3_0089 at 100.903 kb on + strand, within Shewana3_0089 at 100.903 kb on + strand, within Shewana3_0089 at 100.935 kb on - strand, within Shewana3_0089 at 100.969 kb on - strand, within Shewana3_0089 at 101.080 kb on + strand, within Shewana3_0089 at 101.122 kb on + strand, within Shewana3_0089 at 101.122 kb on + strand, within Shewana3_0089 at 101.169 kb on - strand at 101.188 kb on + strand at 101.196 kb on - strand at 101.268 kb on + strand at 101.325 kb on + strand at 101.388 kb on - strand at 101.420 kb on + strand at 101.428 kb on - strand at 101.536 kb on + strand at 101.611 kb on + strand at 101.696 kb on - strand, within Shewana3_0090 at 101.854 kb on + strand, within Shewana3_0090 at 101.948 kb on + strand, within Shewana3_0090 at 101.948 kb on + strand, within Shewana3_0090 at 101.956 kb on - strand, within Shewana3_0090 at 102.101 kb on - strand at 102.325 kb on - strand, within Shewana3_0091 at 102.343 kb on - strand, within Shewana3_0091 at 102.503 kb on + strand, within Shewana3_0091 at 102.510 kb on - strand, within Shewana3_0091 at 102.545 kb on + strand, within Shewana3_0091 at 102.545 kb on + strand, within Shewana3_0091 at 102.553 kb on + strand, within Shewana3_0091 at 102.642 kb on - strand, within Shewana3_0091 at 102.744 kb on + strand, within Shewana3_0091 at 102.752 kb on - strand, within Shewana3_0091 at 102.752 kb on - strand, within Shewana3_0091 at 102.791 kb on + strand, within Shewana3_0091 at 102.810 kb on - strand, within Shewana3_0091 at 102.811 kb on - strand, within Shewana3_0091 at 102.829 kb on + strand, within Shewana3_0091 at 102.837 kb on + strand, within Shewana3_0091 at 102.903 kb on + strand, within Shewana3_0091 at 102.911 kb on - strand, within Shewana3_0091
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 100,605 + Shewana3_0089 0.10 -1.2 100,605 + Shewana3_0089 0.10 -0.9 100,640 + Shewana3_0089 0.16 -3.2 100,640 + Shewana3_0089 0.16 -2.0 100,694 - Shewana3_0089 0.23 +0.1 100,728 - Shewana3_0089 0.28 +0.2 100,827 - Shewana3_0089 0.43 +0.3 100,903 + Shewana3_0089 0.54 -0.9 100,903 + Shewana3_0089 0.54 -0.2 100,935 - Shewana3_0089 0.59 +0.2 100,969 - Shewana3_0089 0.64 -0.8 101,080 + Shewana3_0089 0.80 -0.4 101,122 + Shewana3_0089 0.86 -0.7 101,122 + Shewana3_0089 0.86 -3.4 101,169 - -0.3 101,188 + -0.2 101,196 - -1.3 101,268 + +0.7 101,325 + +0.0 101,388 - -0.7 101,420 + -0.6 101,428 - -1.9 101,536 + -1.1 101,611 + -0.4 101,696 - Shewana3_0090 0.27 -1.5 101,854 + Shewana3_0090 0.63 +0.7 101,948 + Shewana3_0090 0.85 -1.0 101,948 + Shewana3_0090 0.85 -0.7 101,956 - Shewana3_0090 0.87 -0.4 102,101 - -2.6 102,325 - Shewana3_0091 0.22 -1.0 102,343 - Shewana3_0091 0.23 +0.2 102,503 + Shewana3_0091 0.39 +0.2 102,510 - Shewana3_0091 0.40 -0.8 102,545 + Shewana3_0091 0.43 +0.3 102,545 + Shewana3_0091 0.43 -0.6 102,553 + Shewana3_0091 0.44 +0.1 102,642 - Shewana3_0091 0.53 -2.6 102,744 + Shewana3_0091 0.63 +0.9 102,752 - Shewana3_0091 0.64 -0.7 102,752 - Shewana3_0091 0.64 -2.4 102,791 + Shewana3_0091 0.68 +0.6 102,810 - Shewana3_0091 0.70 -0.9 102,811 - Shewana3_0091 0.70 -0.9 102,829 + Shewana3_0091 0.71 -1.0 102,837 + Shewana3_0091 0.72 -0.9 102,903 + Shewana3_0091 0.79 -0.5 102,911 - Shewana3_0091 0.79 -1.5
Or see this region's nucleotide sequence