Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0051 and Shewana3_0052 are separated by 223 nucleotides Shewana3_0052 and Shewana3_0053 are separated by 260 nucleotides Shewana3_0053 and gpsA are separated by 4 nucleotides
Shewana3_0051: Shewana3_0051 - phosphoglyceromutase (RefSeq), at 60,226 to 61,770
_0051
Shewana3_0052: Shewana3_0052 - rhodanese domain-containing protein (RefSeq), at 61,994 to 62,470
_0052
Shewana3_0053: Shewana3_0053 - preprotein translocase subunit SecB (RefSeq), at 62,731 to 63,216
_0053
Shewana3_0054: gpsA - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq), at 63,221 to 64,237
gpsA
Position (kb) 61
62
63 Strain fitness (log2 ratio) -1
0
1 at 61.862 kb on + strand at 61.870 kb on - strand at 61.900 kb on - strand at 61.928 kb on + strand at 61.984 kb on + strand at 61.992 kb on - strand at 62.034 kb on - strand at 62.080 kb on - strand, within Shewana3_0052 at 62.165 kb on + strand, within Shewana3_0052 at 62.180 kb on - strand, within Shewana3_0052 at 62.255 kb on + strand, within Shewana3_0052 at 62.332 kb on + strand, within Shewana3_0052 at 62.332 kb on + strand, within Shewana3_0052 at 62.484 kb on + strand at 62.494 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 61,862 + -1.0 61,870 - +0.3 61,900 - +0.3 61,928 + -0.1 61,984 + -0.5 61,992 - -1.7 62,034 - -1.1 62,080 - Shewana3_0052 0.18 -0.1 62,165 + Shewana3_0052 0.36 +0.5 62,180 - Shewana3_0052 0.39 -0.3 62,255 + Shewana3_0052 0.55 +0.6 62,332 + Shewana3_0052 0.71 +0.4 62,332 + Shewana3_0052 0.71 +0.3 62,484 + +0.6 62,494 + +0.4
Or see this region's nucleotide sequence