Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0049 and Shewana3_0050 are separated by 48 nucleotides Shewana3_0050 and Shewana3_0051 are separated by 10 nucleotides
Shewana3_0049: Shewana3_0049 - C-terminal processing peptidase-3 (RefSeq), at 57,828 to 59,033
_0049
Shewana3_0050: Shewana3_0050 - peptidase M23B (RefSeq), at 59,082 to 60,215
_0050
Shewana3_0051: Shewana3_0051 - phosphoglyceromutase (RefSeq), at 60,226 to 61,770
_0051
Position (kb) 59
60
61 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 58.089 kb on + strand, within Shewana3_0049 at 58.255 kb on + strand, within Shewana3_0049 at 58.376 kb on + strand, within Shewana3_0049 at 58.376 kb on + strand, within Shewana3_0049 at 58.384 kb on - strand, within Shewana3_0049 at 58.384 kb on - strand, within Shewana3_0049 at 58.384 kb on - strand, within Shewana3_0049 at 58.384 kb on - strand, within Shewana3_0049 at 58.540 kb on - strand, within Shewana3_0049 at 58.544 kb on + strand, within Shewana3_0049 at 58.704 kb on + strand, within Shewana3_0049 at 58.979 kb on + strand at 58.979 kb on + strand at 59.136 kb on + strand at 59.136 kb on + strand at 59.301 kb on - strand, within Shewana3_0050 at 59.302 kb on - strand, within Shewana3_0050 at 60.109 kb on + strand at 60.211 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 58,089 + Shewana3_0049 0.22 -0.6 58,255 + Shewana3_0049 0.35 -0.5 58,376 + Shewana3_0049 0.45 -1.6 58,376 + Shewana3_0049 0.45 -0.8 58,384 - Shewana3_0049 0.46 -0.0 58,384 - Shewana3_0049 0.46 -1.4 58,384 - Shewana3_0049 0.46 -0.3 58,384 - Shewana3_0049 0.46 -2.8 58,540 - Shewana3_0049 0.59 -0.4 58,544 + Shewana3_0049 0.59 -0.8 58,704 + Shewana3_0049 0.73 -0.1 58,979 + -0.5 58,979 + -2.3 59,136 + +1.1 59,136 + +0.7 59,301 - Shewana3_0050 0.19 -1.2 59,302 - Shewana3_0050 0.19 -0.4 60,109 + -1.0 60,211 - +0.6
Or see this region's nucleotide sequence