Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4250

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4248 and Shewana3_4249 overlap by 4 nucleotidesShewana3_4249 and Shewana3_4250 overlap by 1 nucleotidesShewana3_4250 and Shewana3_4251 are separated by 144 nucleotidesShewana3_4251 and Shewana3_4252 are separated by 1 nucleotides Shewana3_4248: Shewana3_4248 - hypothetical protein (RefSeq), at 123,084 to 124,388 _4248 Shewana3_4249: Shewana3_4249 - hypothetical protein (RefSeq), at 124,385 to 125,137 _4249 Shewana3_4250: Shewana3_4250 - KAP P-loop domain-containing protein (RefSeq), at 125,137 to 126,921 _4250 Shewana3_4251: Shewana3_4251 - hypothetical protein (RefSeq), at 127,066 to 127,518 _4251 Shewana3_4252: Shewana3_4252 - phage integrase family protein (RefSeq), at 127,520 to 129,604 _4252 Position (kb) 125 126 127Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 124.235 kb on + strand, within Shewana3_4248at 124.243 kb on - strand, within Shewana3_4248at 124.333 kb on - strandat 124.427 kb on - strandat 124.456 kb on + strandat 124.477 kb on - strand, within Shewana3_4249at 124.555 kb on + strand, within Shewana3_4249at 124.563 kb on - strand, within Shewana3_4249at 124.569 kb on + strand, within Shewana3_4249at 124.690 kb on - strand, within Shewana3_4249at 124.691 kb on + strand, within Shewana3_4249at 124.846 kb on - strand, within Shewana3_4249at 124.871 kb on + strand, within Shewana3_4249at 124.994 kb on - strand, within Shewana3_4249at 125.316 kb on + strand, within Shewana3_4250at 125.375 kb on + strand, within Shewana3_4250at 125.393 kb on + strand, within Shewana3_4250at 126.057 kb on + strand, within Shewana3_4250at 126.065 kb on - strand, within Shewana3_4250at 126.254 kb on - strand, within Shewana3_4250at 126.332 kb on - strand, within Shewana3_4250at 126.392 kb on + strand, within Shewana3_4250at 126.572 kb on + strand, within Shewana3_4250at 126.572 kb on + strand, within Shewana3_4250at 126.572 kb on + strand, within Shewana3_4250at 126.580 kb on - strand, within Shewana3_4250at 126.674 kb on - strand, within Shewana3_4250at 126.705 kb on - strand, within Shewana3_4250at 126.840 kb on - strandat 127.067 kb on + strandat 127.153 kb on - strand, within Shewana3_4251at 127.164 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.177 kb on - strand, within Shewana3_4251at 127.177 kb on - strand, within Shewana3_4251at 127.177 kb on - strand, within Shewana3_4251at 127.177 kb on - strand, within Shewana3_4251at 127.181 kb on + strand, within Shewana3_4251at 127.317 kb on + strand, within Shewana3_4251at 127.317 kb on + strand, within Shewana3_4251at 127.325 kb on - strand, within Shewana3_4251at 127.355 kb on + strand, within Shewana3_4251at 127.377 kb on + strand, within Shewana3_4251at 127.378 kb on + strand, within Shewana3_4251at 127.378 kb on + strand, within Shewana3_4251at 127.381 kb on + strand, within Shewana3_4251at 127.385 kb on - strand, within Shewana3_4251at 127.616 kb on + strandat 127.616 kb on + strandat 127.624 kb on - strandat 127.624 kb on - strandat 127.641 kb on - strandat 127.813 kb on - strand, within Shewana3_4252at 127.853 kb on - strand, within Shewana3_4252at 127.853 kb on - strand, within Shewana3_4252

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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124,235 + Shewana3_4248 0.88 -2.1
124,243 - Shewana3_4248 0.89 -0.8
124,333 - -0.2
124,427 - +0.7
124,456 + +2.2
124,477 - Shewana3_4249 0.12 -0.1
124,555 + Shewana3_4249 0.23 -0.5
124,563 - Shewana3_4249 0.24 -0.0
124,569 + Shewana3_4249 0.24 -0.5
124,690 - Shewana3_4249 0.41 -0.3
124,691 + Shewana3_4249 0.41 +0.4
124,846 - Shewana3_4249 0.61 -0.0
124,871 + Shewana3_4249 0.65 -0.5
124,994 - Shewana3_4249 0.81 +0.4
125,316 + Shewana3_4250 0.10 -0.1
125,375 + Shewana3_4250 0.13 +0.1
125,393 + Shewana3_4250 0.14 -0.0
126,057 + Shewana3_4250 0.52 -1.1
126,065 - Shewana3_4250 0.52 -0.5
126,254 - Shewana3_4250 0.63 -0.2
126,332 - Shewana3_4250 0.67 -2.2
126,392 + Shewana3_4250 0.70 -0.1
126,572 + Shewana3_4250 0.80 -2.8
126,572 + Shewana3_4250 0.80 -1.6
126,572 + Shewana3_4250 0.80 +0.2
126,580 - Shewana3_4250 0.81 +0.3
126,674 - Shewana3_4250 0.86 -1.1
126,705 - Shewana3_4250 0.88 -1.2
126,840 - -1.3
127,067 + -0.8
127,153 - Shewana3_4251 0.19 -0.1
127,164 + Shewana3_4251 0.22 -2.1
127,169 + Shewana3_4251 0.23 -0.3
127,169 + Shewana3_4251 0.23 -2.5
127,169 + Shewana3_4251 0.23 -1.0
127,169 + Shewana3_4251 0.23 +0.1
127,169 + Shewana3_4251 0.23 -1.8
127,169 + Shewana3_4251 0.23 -1.0
127,177 - Shewana3_4251 0.25 +0.6
127,177 - Shewana3_4251 0.25 -1.1
127,177 - Shewana3_4251 0.25 -1.3
127,177 - Shewana3_4251 0.25 -1.1
127,181 + Shewana3_4251 0.25 +0.8
127,317 + Shewana3_4251 0.55 +0.8
127,317 + Shewana3_4251 0.55 +0.2
127,325 - Shewana3_4251 0.57 -1.6
127,355 + Shewana3_4251 0.64 -0.0
127,377 + Shewana3_4251 0.69 -1.0
127,378 + Shewana3_4251 0.69 -2.1
127,378 + Shewana3_4251 0.69 -0.1
127,381 + Shewana3_4251 0.70 -0.8
127,385 - Shewana3_4251 0.70 -0.4
127,616 + +1.5
127,616 + -0.1
127,624 - -0.1
127,624 - -0.1
127,641 - +0.1
127,813 - Shewana3_4252 0.14 +0.6
127,853 - Shewana3_4252 0.16 -0.1
127,853 - Shewana3_4252 0.16 -0.5

Or see this region's nucleotide sequence