Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4151 and Shewana3_4152 are separated by 41 nucleotides Shewana3_4152 and Shewana3_4153 are separated by 4 nucleotides Shewana3_4153 and Shewana3_4154 overlap by 4 nucleotides Shewana3_4154 and Shewana3_4155 are separated by 74 nucleotides
Shewana3_4151: Shewana3_4151 - hypothetical protein (RefSeq), at 12,218 to 12,505
_4151
Shewana3_4152: Shewana3_4152 - lipoprotein signal peptidase-like protein (RefSeq), at 12,547 to 12,888
_4152
Shewana3_4153: Shewana3_4153 - nitrogen regulatory protein P-II (RefSeq), at 12,893 to 13,294
_4153
Shewana3_4154: Shewana3_4154 - CzcA family heavy metal efflux protein (RefSeq), at 13,291 to 16,431
_4154
Shewana3_4155: Shewana3_4155 - RND family efflux transporter MFP subunit (RefSeq), at 16,506 to 17,447
_4155
Position (kb) 13
14
15
16
17 Strain fitness (log2 ratio) -2
-1
0
1 at 12.292 kb on - strand, within Shewana3_4151 at 12.542 kb on - strand at 12.666 kb on - strand, within Shewana3_4152 at 12.717 kb on - strand, within Shewana3_4152 at 12.941 kb on - strand, within Shewana3_4153 at 13.038 kb on - strand, within Shewana3_4153 at 13.066 kb on + strand, within Shewana3_4153 at 13.090 kb on + strand, within Shewana3_4153 at 13.356 kb on + strand at 13.392 kb on + strand at 13.482 kb on - strand at 13.710 kb on + strand, within Shewana3_4154 at 13.803 kb on + strand, within Shewana3_4154 at 13.841 kb on - strand, within Shewana3_4154 at 14.007 kb on + strand, within Shewana3_4154 at 14.034 kb on + strand, within Shewana3_4154 at 14.099 kb on + strand, within Shewana3_4154 at 14.440 kb on - strand, within Shewana3_4154 at 14.802 kb on - strand, within Shewana3_4154 at 14.839 kb on + strand, within Shewana3_4154 at 14.917 kb on - strand, within Shewana3_4154 at 14.917 kb on - strand, within Shewana3_4154 at 14.917 kb on - strand, within Shewana3_4154 at 14.965 kb on + strand, within Shewana3_4154 at 14.967 kb on + strand, within Shewana3_4154 at 15.004 kb on - strand, within Shewana3_4154 at 15.022 kb on + strand, within Shewana3_4154 at 15.322 kb on + strand, within Shewana3_4154 at 15.330 kb on - strand, within Shewana3_4154 at 15.330 kb on - strand, within Shewana3_4154 at 15.330 kb on - strand, within Shewana3_4154 at 15.405 kb on - strand, within Shewana3_4154 at 15.405 kb on - strand, within Shewana3_4154 at 15.405 kb on - strand, within Shewana3_4154 at 15.429 kb on + strand, within Shewana3_4154 at 15.437 kb on - strand, within Shewana3_4154 at 15.439 kb on + strand, within Shewana3_4154 at 15.541 kb on - strand, within Shewana3_4154 at 15.556 kb on + strand, within Shewana3_4154 at 15.556 kb on + strand, within Shewana3_4154 at 15.568 kb on + strand, within Shewana3_4154 at 15.568 kb on + strand, within Shewana3_4154 at 15.568 kb on + strand, within Shewana3_4154 at 15.845 kb on + strand, within Shewana3_4154 at 15.940 kb on + strand, within Shewana3_4154 at 15.948 kb on - strand, within Shewana3_4154 at 15.948 kb on - strand, within Shewana3_4154 at 16.288 kb on - strand at 16.335 kb on - strand at 16.369 kb on - strand at 16.391 kb on - strand at 16.427 kb on - strand at 16.453 kb on - strand at 16.569 kb on + strand at 16.602 kb on - strand, within Shewana3_4155 at 16.921 kb on + strand, within Shewana3_4155 at 16.951 kb on + strand, within Shewana3_4155 at 17.106 kb on + strand, within Shewana3_4155 at 17.120 kb on - strand, within Shewana3_4155 at 17.294 kb on + strand, within Shewana3_4155 at 17.302 kb on - strand, within Shewana3_4155 at 17.387 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 12,292 - Shewana3_4151 0.26 +0.7 12,542 - -0.1 12,666 - Shewana3_4152 0.35 -0.2 12,717 - Shewana3_4152 0.50 -0.1 12,941 - Shewana3_4153 0.12 +0.1 13,038 - Shewana3_4153 0.36 -0.1 13,066 + Shewana3_4153 0.43 -0.4 13,090 + Shewana3_4153 0.49 +0.1 13,356 + +1.4 13,392 + -0.1 13,482 - +0.5 13,710 + Shewana3_4154 0.13 +0.7 13,803 + Shewana3_4154 0.16 +0.2 13,841 - Shewana3_4154 0.18 +0.5 14,007 + Shewana3_4154 0.23 -2.5 14,034 + Shewana3_4154 0.24 -1.8 14,099 + Shewana3_4154 0.26 -0.9 14,440 - Shewana3_4154 0.37 +0.6 14,802 - Shewana3_4154 0.48 -1.0 14,839 + Shewana3_4154 0.49 -1.1 14,917 - Shewana3_4154 0.52 -0.2 14,917 - Shewana3_4154 0.52 +0.3 14,917 - Shewana3_4154 0.52 +0.4 14,965 + Shewana3_4154 0.53 +0.2 14,967 + Shewana3_4154 0.53 +0.6 15,004 - Shewana3_4154 0.55 +0.8 15,022 + Shewana3_4154 0.55 -0.6 15,322 + Shewana3_4154 0.65 -0.1 15,330 - Shewana3_4154 0.65 +0.7 15,330 - Shewana3_4154 0.65 +0.6 15,330 - Shewana3_4154 0.65 +0.4 15,405 - Shewana3_4154 0.67 +0.3 15,405 - Shewana3_4154 0.67 +0.1 15,405 - Shewana3_4154 0.67 +0.4 15,429 + Shewana3_4154 0.68 -1.6 15,437 - Shewana3_4154 0.68 +0.3 15,439 + Shewana3_4154 0.68 -0.2 15,541 - Shewana3_4154 0.72 +0.6 15,556 + Shewana3_4154 0.72 -0.2 15,556 + Shewana3_4154 0.72 -0.2 15,568 + Shewana3_4154 0.72 -0.3 15,568 + Shewana3_4154 0.72 -1.1 15,568 + Shewana3_4154 0.72 -2.4 15,845 + Shewana3_4154 0.81 -1.3 15,940 + Shewana3_4154 0.84 +0.0 15,948 - Shewana3_4154 0.85 +0.2 15,948 - Shewana3_4154 0.85 +0.0 16,288 - +0.2 16,335 - -0.4 16,369 - -0.1 16,391 - +0.2 16,427 - +0.7 16,453 - -0.3 16,569 + -0.4 16,602 - Shewana3_4155 0.10 +0.5 16,921 + Shewana3_4155 0.44 -0.3 16,951 + Shewana3_4155 0.47 -1.8 17,106 + Shewana3_4155 0.64 -0.6 17,120 - Shewana3_4155 0.65 +0.3 17,294 + Shewana3_4155 0.84 -0.8 17,302 - Shewana3_4155 0.85 +0.8 17,387 + +0.3
Or see this region's nucleotide sequence